LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3771	ATGTATGAGGCTGGCCCTGACGAATTGCTTCTGAGAATGGATGATGTAGCGGGTCTATCGGAGGCAGCAGGTTCGAGATTTACTTCGTTGGAGCTTATTGGGCAGGGATCCTTCGGTGACGTCTATAAAGGGTTTGACAAGGAGCTCAACAAAGCAGTCGCCATCAAAGTGATTGATTTGGAAGAATCAGAGGATGATATTGAGGATATTCAGAAGGAAATATCTGTTTTGTCACAATGTCGATGTCCATATATCACAGAGTATTATGGTTCCTTTCTCAATCAAACTAGACTTTGGATAATAATGGAATATATGGCTGGCGGCTCTGTTGCTGATCTGCTCCAAGCAGGTACTCCCCTTGATGAAATGTCAATTGCTTGCATTCTACGTGACTTGCTGCATGCTATTGATTACCTACACAATGAAGGAAAAATTCACAGAGACATTAAAGCTGCAAATATTCTATTGTCAGAGAGTGGTGATGTAAAGGTGGCAGATTTTGGTGTTTCTGCTCAATTAACAAGGACTATATCAAGGAGAAAGACATTTGTAGGAACACCATTCTGGATGGCACCTGAGGTTATTCAGAATACAGAAGGGTATAATGAGAAGGCAGATATTTGGTCCCTTGGGATTACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCACCCCATGAGAGTGCTTTTCATCATACCCCGAGAGAATCCACCACAGCTAGATGAACATTTTTCTCGTCCGCTGAAAGACTTCGTTTCGTCATGTTTGAAGAAGGTTCCTGCTGAGAGGCCAAGTGCTAAAGAACTTCTCAAAGATCGTTTTATACGGAATGCTAGGAAGAATCCAAAGCTCTTGGAAAGAATAAGGGAGCGTCCAAAGTATCAAATAAAGGAAGATCTGGAGACACCTAGAAATGGCCCAAGAGGGATAGGGGAGGCATCAGATACTATGAAGGTGGCGAGAGATTTTAAAGGTGAAGAAGCTAATCGAGCAAGCAATCTGGGTAAAACCCTTAAAAGTGCTGGGTGGGACTTCAGCATTGGTGGATCAGAGGGTACTGGAACCTTTCGTAGTGCCTCACGACCGCCGCAGTTTAGGGAAAAGAAAACTGAAGTTTCAAACAATCAGCTTACCCAAAGAAAAGCTCCCGAGATTGGTTATCAAGGGGGATCTGCCAATAGAAGTTCACTTAATGAGTCACTTGAAAGTTCCTTTGGAAAAGATGTTAGAGTTTCTTACGATGATGTGCAGCTGGATAATCAACTTGAAGATGATGAATTGTATGGGAATGGATCAGGAACAGTTGTTATTCGATCTCCAATAGGATCAAGGCCACCTGTTTTTCGTGACCAAAGCTCCCAGTCTAGCGGCAGCTATGCTTCTTTTGAAGATACTTCTACAAGCGGAACTGTTGTTTTTCGTAGCCAGCATGATGATTCTGATTCTCCACAGACACCAAGGACCCGTCTAGGACTTCATGACAGAAATTCAAATGCATCGTTGGAAGATAGCGCTATAAACCTTGCCGAGGCAAAGGCTGCTATCCAAGGAGGGCAAAGGAAAGCAAATGCTCGAGAGAGATTTTCCCTGGCAAAAATCAACACCGAAATACCGGAAAGCAAGCGAGACCAATTGAGTAGCAGCTCTGATTCGTTGAGATCAAGTCGTGAATATATTGATGTACAAAAGGGTGTGTTAAGACCACACTATGATGATGAGGAAAGTACTAAAATAGTATCAACCTCGGTCCCATTATCAGCTTTGCTTATTCCTTCATTAAAAGAGGCCATTGCTGATGATCCAGAAGGTTCCATGGTTCGGGCAGTCATCAATGCTTTCGTAGACATGGAGGGTTCAATGCCTAGATCCTGTGATGTTCTTGTCAAAAAATTGCTTCAGCGGTTGGCAAGTTCAAAGGAAGATTCATTGAAGGACCTGAAGGAATTGGCAAGCCAAATATTTAGCAGGACCATGTCAGCAGAAGAAACCCGAAATGCAGAGGCTGATAATCGGAAGAAACAACAGAACAAGGAACGTCATCCAAATAGCAATTCAAGCCCTCTTGCAAGATTTCTTCTCTCAAGATGGCAAAGCCAAACCTCACGGGATCTACACCAGTCTTGA	2136	0.4335	MYEAGPDELLLRMDDVAGLSEAAGSRFTSLELIGQGSFGDVYKGFDKELNKAVAIKVIDLEESEDDIEDIQKEISVLSQCRCPYITEYYGSFLNQTRLWIIMEYMAGGSVADLLQAGTPLDEMSIACILRDLLHAIDYLHNEGKIHRDIKAANILLSESGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNTEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPLKDFVSSCLKKVPAERPSAKELLKDRFIRNARKNPKLLERIRERPKYQIKEDLETPRNGPRGIGEASDTMKVARDFKGEEANRASNLGKTLKSAGWDFSIGGSEGTGTFRSASRPPQFREKKTEVSNNQLTQRKAPEIGYQGGSANRSSLNESLESSFGKDVRVSYDDVQLDNQLEDDELYGNGSGTVVIRSPIGSRPPVFRDQSSQSSGSYASFEDTSTSGTVVFRSQHDDSDSPQTPRTRLGLHDRNSNASLEDSAINLAEAKAAIQGGQRKANARERFSLAKINTEIPESKRDQLSSSSDSLRSSREYIDVQKGVLRPHYDDEESTKIVSTSVPLSALLIPSLKEAIADDPEGSMVRAVINAFVDMEGSMPRSCDVLVKKLLQRLASSKEDSLKDLKELASQIFSRTMSAEETRNAEADNRKKQQNKERHPNSNSSPLARFLLSRWQSQTSRDLHQS*	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3771	711	Pfam	Protein kinase domain	28	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g3771	711	Coils	Coil	633	653	-	-
	Lja3g3771	711	MobiDBLite	consensus disorder prediction	666	683	-	-
	Lja3g3771	711	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	12	709	-	-
	Lja3g3771	711	SMART	serkin_6	27	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g3771	711	MobiDBLite	consensus disorder prediction	353	405	-	-
	Lja3g3771	711	MobiDBLite	consensus disorder prediction	299	320	-	-
	Lja3g3771	711	ProSiteProfiles	Protein kinase domain profile.	27	279	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja3g3771	711	Coils	Coil	662	682	-	-
	Lja3g3771	711	ProSitePatterns	Protein kinases ATP-binding region signature.	33	56	IPR017441	GO:0005524
	Lja3g3771	711	SUPERFAMILY	Protein kinase-like (PK-like)	24	306	IPR011009	-
	Lja3g3771	711	CDD	STKc_MST3_like	25	299	-	-
	Lja3g3771	711	PANTHER	STERILE20-LIKE KINASE, ISOFORM B-RELATED	12	709	-	-
	Lja3g3771	711	MobiDBLite	consensus disorder prediction	684	711	-	-
	Lja3g3771	711	MobiDBLite	consensus disorder prediction	661	711	-	-
	Lja3g3771	711	Coils	Coil	60	80	-	-
	Lja3g3771	711	Gene3D	Transferase(Phosphotransferase) domain 1	24	310	-	-
	Lja3g3771	711	MobiDBLite	consensus disorder prediction	426	502	-	-
	Lja3g3771	711	MobiDBLite	consensus disorder prediction	450	502	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3771	Lja-Chr3	74375110	74396587	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g3771	13	708	MAP Kinase Kinase Kinase Kinase	AT3G15220	63.571	0.0	839

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-YSK	Lja3g3771		Pkinase	7.8e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3771	K08838		-	gmx:100815042	1089.33