Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3762 ATGAATTGTTTATCTCTTCTTTTCCGAAAAAGGGGCTCTACCTCCACCACACAACCAACTGATGTTGATATAGATATTTCAAACATTAAGAATGTCAACCTTTACACTTACAAGGAACTGCAAATTGCCACTGAAAATTTCAGTCGAGCAAACAAGATTGGGGTGGGAGGTTTTGGTTCAGTCTATAAGGGAAAGCTTAGAAATGGTACCCTGGCTGCTATAAAGGTTTTGTCAGCTGAATCGAAACAAGGTGTTCGTGAGTTCTTGACAGAAATTGAGGTGATATCTAGTGTCAAGCATGAAAATTTAGTTCAGTTGTATGGATGCTGTGTGGAACAAGACCACAGGATTTTGGTATATGTATATCTCGAGAATAACAGCCTAGCACAATCACTTCTTGGTGGAGGCCATAGTAGCATCCAATTAAGTTGGCAAGTACGGAGGGACATCTGCATTGGTGTTGCGCGCGGCCTAGCATTCCTTCATGATGAAGTCAGGCCACATATTATTCACAGAGACATTAAAGCAAGCAATATATTACTTGACAAAGACCTCCAGCCAAAAATTTCCGATTTTGGCCTTGCAAAACTTATTCCACCAGGCGAGACCCATGTTAGTACACTTGTTTCTGGTACAGTTGGCTATCTGGCCCCAGAATATGCAATGCGAAATCAGGTGACCAGAAAATCAGATGTCTATAGTTTCGGAATTCTACTACTAGAAATTGTTAGTGGAAGATGTAACACAAATAGACGTTTGCCTATTGAAGAACGGTTTCTTCATACAAGGGCATGGAATTTGCATGAGAGGGGAGAGCTGGAGAGTTTGGTTGATATCTCGCTAGATGGAGACTTCAATGTTGAGGAGGCACTGCGGTTTTGTAAGATTGGTCTTCTTTGCATTCAGGATTCTCTTCACCTTCGACCTTCAATGTCTTCTGTGCTTGACATGCTGGTAGGTAAAACACATGTGAATGAGAAGAGGATGACAAAACCAGGTTTAATATTTGAGTTTGTGGAAGCCAATGAACAAGGGAAACAGAAAGGCAAGGCTGAAGTTGAAAATACCTCGTCTTTTGCTGGTTCAGGGAATCAGGATGATTCATCTTTGTCAGGAAGCACATATTCTTTGGCTACTATGACCTTCACTTCACTCTATGACCGAAGCAATTAA 1173 0.4126 MNCLSLLFRKRGSTSTTQPTDVDIDISNIKNVNLYTYKELQIATENFSRANKIGVGGFGSVYKGKLRNGTLAAIKVLSAESKQGVREFLTEIEVISSVKHENLVQLYGCCVEQDHRILVYVYLENNSLAQSLLGGGHSSIQLSWQVRRDICIGVARGLAFLHDEVRPHIIHRDIKASNILLDKDLQPKISDFGLAKLIPPGETHVSTLVSGTVGYLAPEYAMRNQVTRKSDVYSFGILLLEIVSGRCNTNRRLPIEERFLHTRAWNLHERGELESLVDISLDGDFNVEEALRFCKIGLLCIQDSLHLRPSMSSVLDMLVGKTHVNEKRMTKPGLIFEFVEANEQGKQKGKAEVENTSSFAGSGNQDDSSLSGSTYSLATMTFTSLYDRSN* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3762 390 Gene3D Transferase(Phosphotransferase) domain 1 123 333 - -
Lja3g3762 390 SMART serkin_6 47 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3762 390 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Lja3g3762 390 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Lja3g3762 390 CDD STKc_IRAK 53 318 - -
Lja3g3762 390 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 376 - -
Lja3g3762 390 MobiDBLite consensus disorder prediction 347 373 - -
Lja3g3762 390 SUPERFAMILY Protein kinase-like (PK-like) 24 319 IPR011009 -
Lja3g3762 390 MobiDBLite consensus disorder prediction 351 373 - -
Lja3g3762 390 Pfam Protein kinase domain 48 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3762 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lja3g3762 390 ProSiteProfiles Protein kinase domain profile. 47 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3762 390 PANTHER RECEPTOR-LIKE KINASE 3 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3762 Lja-Chr3 74244354 74247757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3762 6 335 Receptor kinase-like Gene Family AT1G56120 51.212 7.77e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g3762 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3762 - - adu:107459855 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3762 3 74244354 74247757 Lja3g3762 3 74244354 74247757 ECH