Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3757 ATGTCGCTGAGGAACGTTTTCCGTTCTCGCAAATTCTCCAGATCCTTCCCGGAAGTCCGATCAATCGACACCGCCGACGAGGACCTCCACGGCGGCGGCGCCGCCGAGGAGGCCAATGCGTGGTCCACCATGTTGCCGGAGCTTCTCGGGGAAATCATTCGCCGCGTCGACGCCGCCGAGGACCACTGGCCGCACCGCCAAAACGTCGTCGCTTGCGCCTGCGTTTGCAAGCGCTGGAGAGACATGACTCGCGAGATCGTTCGGTCTCCTTCTCACAACGGCAAAATCACTTTCCCTTCTTGCCTTAAACAGCCAGGGCCAAGTGATCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTATCTCTATCTTGCTCTTACATCATCATTGACAGATAAAGGGAAATTTCTGTTAGCAGCTAGAAGATATAGGTGTGGTACCCATACTGAGTATATAATATCACTTGATGCTGATGATTTATCCCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGTACCAACTTCACAATTTTTGACAGCCAACCACCCCATAGTGGTGCCAAACCATCAAGTGGTAGGGCTAGCCGTCGTTTTGCCAGCAAACAGATAAGTCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGGATGGTTTGCTCACTGAAGTGTCCTGTCTCCTCCGCGGGTGAGAGTCCAGATAGCATGTCTCCGGATGGCAATAAGATGCACAGTAAAGAACATGGCTACACAATCTTGAAGAATAAAGCTCCGAGGTGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTTGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCTGGAGGGAAAGGAGACGAGGAAACGGTTCTCCTTCAGTTTGGTAAAGTAGGGGATGATATTTTTACCATGGATTATAGGCAGCCCTTATCTGCCTTCCAGGCGTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1101 0.495 MSLRNVFRSRKFSRSFPEVRSIDTADEDLHGGGAAEEANAWSTMLPELLGEIIRRVDAAEDHWPHRQNVVACACVCKRWRDMTREIVRSPSHNGKITFPSCLKQPGPSDPHQCLIKRNKKTSTFYLYLALTSSLTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIFDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVSSAGESPDSMSPDGNKMHSKEHGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3757 366 PANTHER TUBBY-RELATED 28 366 - -
Lja3g3757 366 MobiDBLite consensus disorder prediction 190 209 - -
Lja3g3757 366 Pfam Tub family 102 361 IPR000007 -
Lja3g3757 366 ProSitePatterns Tub family signature 2. 351 366 IPR018066 -
Lja3g3757 366 ProSitePatterns Tub family signature 1. 294 307 IPR018066 -
Lja3g3757 366 Gene3D Tubby Protein; Chain A 97 366 IPR025659 -
Lja3g3757 366 SUPERFAMILY Tubby C-terminal domain-like 90 366 IPR025659 -
Lja3g3757 366 SUPERFAMILY F-box domain 39 84 IPR036047 GO:0005515
Lja3g3757 366 Pfam F-box domain 46 88 IPR001810 GO:0005515
Lja3g3757 366 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 28 366 - -
Lja3g3757 366 PRINTS Tubby superfamily signature 276 293 IPR000007 -
Lja3g3757 366 PRINTS Tubby superfamily signature 323 342 IPR000007 -
Lja3g3757 366 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Lja3g3757 366 PRINTS Tubby superfamily signature 294 310 IPR000007 -
Lja3g3757 366 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Lja3g3757 366 PRINTS Tubby superfamily signature 344 366 IPR000007 -
Lja3g3757 366 PRINTS Tubby superfamily signature 155 171 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3757 Lja-Chr3 74186834 74192513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3757 1 366 TUB Transcription Factor Family AT1G53320 71.762 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lja3g3757 Tub 2.5e-100 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3757 K19600 - gmx:100808096 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3757 3 74186834 74192513 Lja3g3757 3 74186834 74192513 ECH