Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3755 ATGAAGAGGAGCTGCAGTTTGAGGAGCACCCCCACCAGCTTCAGCAGCAGCAGCAACAAGTACCAAATGGAAAACTGCAACTCTCATTGTATGAATGGATCAGAGGACTACATGAATGGGCTCCCATGGCCACAAAGATCATACACTTGTAGCTTCTGCAGAAAAGAGTTCAAGTCAGCTCAGGCACTTGGTGGCCACATGAATGTTCATAGGAGGGATAGAGCAAGGCTAAGGCAATTATCCCCAACTGATCTCAACCTTAACCTTAACAACAACCCTAACTGCTCATCAACCTCTTCTTTGTCCTTATTACCACCACCACCATCATCATCTTCAAATTCTTCTTCTGCAACAATACCCAAGCCTGCAGCTGCTTCCACATTATTACCCTTGTTTGTTTCTCCCTGTACTCCTCCTCCTCCTTCATCATCATCATCATGGGTTGTTGTGGATGGCATCTTATGGAGCACAAAGCCCTCAGAACCTGCAAAACCCGAGATTGCAGAGTCTTTATCAGGGAATATTGGAGAATATAAAGCTTTTGTTTCACGTGAAGATAGGTGTCGAATGTTGAAGAAAGATAAGATCCTCAGGATGGACTTGGAGATAGGTTTGCCTACAAGTTATGATTTAGATCTGGAGCTTCGTCTGGGCGTCGTGCGTTTTCGTTTCTCCTTAAAGTTTTTGCCACCACATCTCACTGAACTGAATCCACCACCAAACCCACATTCGACCTCCATAAAACCCAAATCGACACAACCTTCTTCAACACCCAAACTCGCGACACCGTTCCTTCTTCTTCAGCCGAGCCACCGCTGCACTACTTTCTTTTTTTTCAGCCAAACCACCCTCCCTGTCCTTCGACCAGATCCATCTTCAGCTTCTTTGTGTCTGACAAAGGTGAAGCTTCAGGTGATTCATTTTTAG 927 0.4542 MKRSCSLRSTPTSFSSSSNKYQMENCNSHCMNGSEDYMNGLPWPQRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQLSPTDLNLNLNNNPNCSSTSSLSLLPPPPSSSSNSSSATIPKPAAASTLLPLFVSPCTPPPPSSSSSWVVVDGILWSTKPSEPAKPEIAESLSGNIGEYKAFVSREDRCRMLKKDKILRMDLEIGLPTSYDLDLELRLGVVRFRFSLKFLPPHLTELNPPPNPHSTSIKPKSTQPSSTPKLATPFLLLQPSHRCTTFFFFSQTTLPVLRPDPSSASLCLTKVKLQVIHF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3755 308 ProSitePatterns Zinc finger C2H2 type domain signature. 50 70 IPR013087 -
Lja3g3755 308 PANTHER OS07G0101800 PROTEIN 15 219 - -
Lja3g3755 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 48 75 IPR013087 -
Lja3g3755 308 Pfam C2H2-type zinc finger 48 72 - -
Lja3g3755 308 Gene3D Classic Zinc Finger 41 96 - -
Lja3g3755 308 MobiDBLite consensus disorder prediction 235 257 - -
Lja3g3755 308 SMART c2h2final6 48 70 IPR013087 -
Lja3g3755 308 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
Lja3g3755 308 MobiDBLite consensus disorder prediction 96 119 - -
Lja3g3755 308 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 15 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3755 Lja-Chr3 74141330 74146337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3755 8 220 C2H2 Transcription Factor Family AT3G23130 38.288 3.84e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3755 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3755 - - var:108333719 174.096