Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3744 ATGTCGCATTCCTCGGGAAAACCCGTTTCCGACGTCATCGGGTTCAACAAACCGGATTTCCGAGAGCTCGATCTAGGTTCCCCCGTTTCGCCATTGCGAACGCGCGGACCCGCCGCCGCCAGCAGCAGTTCTGGCTCATCCGGATCGTTCTCCGGTGGTCGAAACCCGGTTCCTAGAAGATCCGATTCCGGCGAGCTTTCTGGCTCCAGCGAGAACAGCCCCACCGCTAAGGGATCCAAGCTGGGTCACGCCAGATCCGATTCTGGATCAGCTCCACCGCCGCTGTTCCAGTCCGTCACCTCGCCGGTGATGAATGTTCTCCCCACCGGAAACATTTGCCCATCTGGCAGGATCCTGAAAACCGGCATGGCAGCGCCGAGCCGGACCTCCCGGACGGATGTTCTCGGTTCCGGTACGACCAACTATGGCCACGGAAGCATTATGCGTGGCGGCGGCGGCGGAGGAACCACCACCGTGGCCGTTAGTGACCCTTTGAAGAGAGGAGTCCAGAGTATGGATCCAGAGGAGCTCAAGAAAGCAGGGAATGAGCATTACAAGAAGGGTCACTTTGCGGATGCGTTGAGCTTTTATGACCGCGCGATTGCGTTGTCGCCGGCCAGCCCTGCTTACCGGAGCAACCGTGCCGCGGCGCTGACGGGTTTGAAACGGCTGGTGGAAGCGGTGAGGGAATGTGAGGAAGCTGTGAGATTGGATCCTAATTATAGCAGGGCTCATCAGCGTTTGGCTTCTCTTTTTCTCAGGTTAGGACAAGTTGAGAATGCCAGGAAGCACCTCTGTTATCCGGGGCTGCATCCGGATCCGTCGGAGATGCACAAGTTGCAAATGGTGGAAAAACATATAAGCAAATGTGCAGATGTTAGGAGGATAGGGGATTGGAAAAGTGTTCTCAGGGAAGTTGATGCTGCTGTTACTGCTGGAGCGGATTCTTCGCCTCAGCTCTTTATGTGTAGAGCAGAAGCCTTTTTGAAGGTCCATCAAATTGATGATGCGGAATCAATTTTGTCACATGTTCCAAAATCGGAACCACATACAAGTTCCTCTTCTCAGGCTAGATTTTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTTAGAGCTCAGATTGAGATGGCATTGGGAAGGTTTGAGAGTGCAGTTACAGCTGCTGAGAAAGCCAGTCAGATCGATTCCCGCCACGTTGAAGTTGCTGTTTTGCTGAACAATGTAAGGATGGTGGCAAGAGCTCGGATGCGAGGAAATGATCTTTTCAAATCTGAAAGGTTCACTGAGGCTTGCTCAGCCTATGGGGAAGGTCTGAGACTAGACCCTTCCAATTCTGTTCTATATTGCAACAGAGCGGCTTGTTGGTTCAAGCTTGGTCGGTGGGAAAGATCAATTGAAGACTCCAACCGAGCTTTACATATCCAACCAAATTACACGAAAGCTCTTCTTAGAAGAGCTGCATCAAATTGCAAGCTAGAACGGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTGCGGAGAGAACTTCCGAACGACAATGAAGTTGCTGAGGCTCTTTTTCACTCGCAAGTTGCACTGAAGAAATCACGTGGGGAAGACGTGTCTAATTTAAAATTCGGTGGTGAAGTGGAAGAAGTGTCAGGTCTTGAGCAGTTTAGAGCTGCAGTATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAGGTTGCATCTAACTCCCACTGCCAGCAAATTTCACCATTTGTGGATATACTGTGTGGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAGCCCGACAATTGCAACCGCTGAGAACGTTAGGGTTGTACCAACCTTCAAGATATACAAAAATGGCAGTAGAGTGAAGGAAATCATTTGCCCTAGTCGCGACATATTGGAACACACTGTGAGGCATTACAGCTCTTAG 1941 0.5023 MSHSSGKPVSDVIGFNKPDFRELDLGSPVSPLRTRGPAAASSSSGSSGSFSGGRNPVPRRSDSGELSGSSENSPTAKGSKLGHARSDSGSAPPPLFQSVTSPVMNVLPTGNICPSGRILKTGMAAPSRTSRTDVLGSGTTNYGHGSIMRGGGGGGTTTVAVSDPLKRGVQSMDPEELKKAGNEHYKKGHFADALSFYDRAIALSPASPAYRSNRAAALTGLKRLVEAVRECEEAVRLDPNYSRAHQRLASLFLRLGQVENARKHLCYPGLHPDPSEMHKLQMVEKHISKCADVRRIGDWKSVLREVDAAVTAGADSSPQLFMCRAEAFLKVHQIDDAESILSHVPKSEPHTSSSSQARFFGMLSEAYSYFVRAQIEMALGRFESAVTAAEKASQIDSRHVEVAVLLNNVRMVARARMRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGRWERSIEDSNRALHIQPNYTKALLRRAASNCKLERWEEAVKDYEVLRRELPNDNEVAEALFHSQVALKKSRGEDVSNLKFGGEVEEVSGLEQFRAAVSLPGVSVVHFEVASNSHCQQISPFVDILCGRYPSINFLKVDIQESPTIATAENVRVVPTFKIYKNGSRVKEIICPSRDILEHTVRHYSS* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3744 646 SUPERFAMILY Thioredoxin-like 449 643 IPR036249 -
Lja3g3744 646 MobiDBLite consensus disorder prediction 125 144 - -
Lja3g3744 646 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 14 644 - -
Lja3g3744 646 MobiDBLite consensus disorder prediction 36 79 - -
Lja3g3744 646 SMART tpr_5 412 445 IPR019734 GO:0005515
Lja3g3744 646 SMART tpr_5 366 399 IPR019734 GO:0005515
Lja3g3744 646 SMART tpr_5 446 479 IPR019734 GO:0005515
Lja3g3744 646 SMART tpr_5 174 207 IPR019734 GO:0005515
Lja3g3744 646 SMART tpr_5 480 513 IPR019734 GO:0005515
Lja3g3744 646 SMART tpr_5 208 241 IPR019734 GO:0005515
Lja3g3744 646 CDD TRX_family 551 632 - -
Lja3g3744 646 MobiDBLite consensus disorder prediction 1 102 - -
Lja3g3744 646 Pfam Thioredoxin 551 633 IPR013766 -
Lja3g3744 646 ProSiteProfiles TPR repeat profile. 446 479 IPR019734 GO:0005515
Lja3g3744 646 SUPERFAMILY TPR-like 174 401 IPR011990 GO:0005515
Lja3g3744 646 Gene3D Glutaredoxin 539 645 - -
Lja3g3744 646 Pfam Tetratricopeptide repeat 367 397 IPR019734 GO:0005515
Lja3g3744 646 MobiDBLite consensus disorder prediction 124 154 - -
Lja3g3744 646 ProSiteProfiles TPR repeat profile. 174 207 IPR019734 GO:0005515
Lja3g3744 646 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 14 644 IPR044534 -
Lja3g3744 646 Gene3D Tetratricopeptide repeat domain 172 532 IPR011990 GO:0005515
Lja3g3744 646 Pfam Tetratricopeptide repeat 417 478 - -
Lja3g3744 646 Pfam Tetratricopeptide repeat 180 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3744 Lja-Chr3 74054918 74058661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3744 411 556 U-box Gene Family AT3G07370 28.962 1.09e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3744 - - gmx:100795358 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3744 3 74054918 74058661 Lja3g3744 3 74054918 74058661 ECH