Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3742 ATGTCAGTCGGCAATGACATAGAAGATTTAGTCGAGGATAATTTTGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGTTCTTTTCTGGTAACGACTTGTTTCAGTCTAACCAGAGGTCTCTTGTTTCTGGAGTTATCAACTTTGAACAAGAATCCAATAAAAGCACATTTAAATCATTTGGCTCTAGTAATGAAAACTCAGTTGTATGGCGTCCCTCGTCTTCAAGACCTACACATCCGGTGGAGGACATTAATGTAATTCAGAATTCCAAAGAGACTGCTCTGGGGTGTAATGTCATTTGTGACGACCAGAGTGATGAGGATGTAGTTGTCAAACGTATGAAATTTTCTCTGCATGAACGTCCTTGTAGTAGATCTAATTCAGAAAATTCTTTTTGTTCATCAGGACTTTCAACAGTAGTAGTTTCTAACCCGTCTCTTGCTGCTACGGACTGTGGTAATGAACCAATTGCATTCCGCTTAGTTGAATCTTCTAAACATGGTGTGATATCTAGCTGCTTCTTGTTTAAGCATGACATGTTACAGAGTAAAAAAGCTGCTACAGATGATGCAGATGATATGGTTTGTAAATCAATTACGGCAGAGGGGAATGTTGTCAAAGAGGCATTTGTAAGTAAAGTGGTTGCTTCTCCTGTTTCGCAGGAGAGCTTTGCAAACAGGCTTGTAGTTACAAGTCCATCAATGACCATTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAGGAAATGCCAGAAGGGTTTCTATCTTCTAATATGGATATCCCAAATTCATCATCAAAGCCAGACAAAGAAGATCGTCGTGCTTTATTGCAGTTTCATTGTGTGCAGTTGCTTATGATGGCAGGATGGTCTATTGAGAAGCGCCAACGACCTAGTAGGCGTCACATGGATTCGGTTTATAGGACTCCAAAGGGAAAGCCCATTCGGGAATTTACAACAGCTTGGAGATTATGTGGTCAGGATTTGTCTGTTGAAAAGTGCAATTTGATGTATGCAGATTGTAAGGAGTGGACTGACATTAGCCAATTCTGGTCTGATCTGTCCTGTGCACTGATAAATGTTGAGAAAACAAAGACACAGTCAGATCCTGCAGCTATGTTGGCTTATCGATGGTTGCTTTTGGATCCTTTTGTTGTAGTTATATTTGTTGATAAAAAGATTGGTGCACTGAAAAAGGGAGAGATAGTAAAAGCATCTTGGAGTTTAGTTTCTGGTAAGCATAAGATGACACATGCTCCCATTGATTCAGCTCAGAAGAACATTGGTGGTGCTCCTTTTGATGAAAAACATGACAAAGCCTTTCTCTGTGATTCTTCTACAGCCACTGAAACCACACTAACTGCTTTGGTTAAATACCATGGCCATGATCAGAAATCTAATGGTAGCCAGGAAGATATGTATGTCATGCAACATAGTCCCAACAGCATGGAATGTAGCAAAATGTCTGTGAGCAAAAGTAACATGGATCTAGTCTCTTTACATGGTTTTGGATTGGATAGTGCCTGTACTCAGTCAAGAGCTTCCACTTTAGATATTCCTCCTGACTCGAGAAATTTGAACCAGGTACTTGAAGTGTCCAAAGTGAATGCTGTTCATCAAGCTAATATTAGAACTTCCAAATGCTTTGATAAAGAGCGATCAGTTCATCTGAAAACAAATCAAAGAATCGATGGAGATGTACCAATGGACACGTCAAAGAAAAATAATGCAAATGGTTTGAGCCACGACATGGTTCATTCTCATGATTCAAAAGCTATTAAACAGTCTGAATGCAGTGAGGAAGAAGGAATGGAAAAATCAATGGCTACTCTATTCAGAATAGATAACACACATTCTGACACAAATTTTATTCTTAAAAAGAAAATGCAGAGGAAGTGCAAAAGGGTATCTGAAATCAAGCCAAGTACAGCAGACCATAGTCGCATGCTGGGCTCAACTGATACTGACCGGGTGCAGTCACAGAATCGTGATGCATGTGGCACTCAGTTAGCTTTGGTCGAGGTCCATAATTATCAAGTTGACAATGCTGGAAAAAGAAGAAACCATGGAAAGTTATCATCTGTCAGTGAAATCCAGCAACATGTTAGGAAAACAAACTACTCCATAACTGAAACAAAAAAGCCCAATGGATGCCTGATTAAAGATGATGATCTATTAGTATCAGCAATATTCAGGAATAAAGGCTTTAGCCCAAAGAAAATTCGAGGTAGTTATAGACCTAAATCCTGCAAGAGAAAGTTTAAAAGCCAAAAGGAACGGTGCAGGTTGCTACCCAGGAACCCTTGTAATGGAGGAAAGCACAATAAGGATGGCAAGAGGTATTATTTGGGACAAAGGACACTTTTGTCCTGGTTGATTGAGCATGGGGTCATATCTTTGAATGATGTGATTCAATACCGAAACCCTAAAAATGGTTCTGTCACTAAAGATGGTAGGATCACCAAAGATGGTATTATTTGTAAGTGTTGTGGTAAGGTGCTGACACTATCAGAGTTCAAGTTTCATGCTGGGTTTACACTAAGTCGCCCCTGCTTGAATCTTTTCATGAAGTCTGGTGAGCCCTTTACAGTGTGCCTCCTTCAAGCATGGTCAGCTGAATATCAAGCCAGGAAAAGTCTGAATCAAGCTGTGCCTGTTGATGAAAGTGATAGAAATGATGACTCGTGTGGGTTGTGTGGTGAGGGGGGTGAGCTGATATGCTGTGATAACTGTCCATCTACTTTTCACCTGGCTTGTTTGTCCACTCAGGAGATCCCTGATGGCAATTGGTACTGCACAAACTGCACCTGTCGAATATGTGGAAATTTGGTCAATGATAAAGAGGCTTCAGATGCGTTTGATTCATTGCAATGCTCACAGTGTGAACATAAATATCATCAGAAATGCCTGAGAGAAAGAAATAAACAAGAACTCACAGTTTCAGACACTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTATACTCTGGTCTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGGCTTCTCATGGATGCTTCTTAGATGCATTCACGACGACCAAAAGGTTCATTCTACCCAAAGGCTTGCCCTAAAGGCAGTATGCAACACAAAATTAGCTGTCGCCCTCACCATCATGGAGGAGTGTTTTTTGTCAATGTCGGATCCAAGAACAGGCATCCAAATGTTACCCCAAGTTTTATACAACTGGGGGTCTGAATTTTCTCGTCTGAACTTTCAAGGGTTTTACACCGTGGTGTTGGAGAAACAAGATGTATTAGTATCTGTAGCATCTATCAGGGTGCATGGATCTTCAGTTGCTGAGATGCCTCTAATTGCAACTTGCAGTCAGTATCGTCGTCAGGGAATGTGCCGACTCCTTGTTAGTGCAATTGAAGAGATGCTAATATCTGTCAAGGTAGAAAAGCTTGTGATAGCAGCCATTCCTGATTTGGCGGAGACATGGACTAAGGGCTTTGGATTCATACCTGTAAGTGACATTGAAAAGCAAAGATTGAAAAGAATCAACTTGATGGTTTTTCCTGGGACGGTGTTACTTGAAAAGCCCTTGTATGGGAAGCAGAAAACTGGAGGACTCTGTGATCAATCAACTTTAGCATCAAATGAAATGACCAAAGTAGGTATCTGTTCTGAAGAAATTACCTTATTGCCGCAAGATGTTCGAAACAAACCTACCAGTAATGTTGGTGCTAATTCAGAATATGAACCTGTGGACAGCAAAATTCAGTCAGACTATAAGGCTGGCAGTGAAACAAGCAGAGAAGATAATACTCAAACTGTTGAGACTGCTTTAGGAGCCAAAGAATTAACAGAAACAAGTAGCTGTTATAGAGGAAAGACTGTGATGGTAGGTGGATCAGAGAAATCTATGGAAGGAACCAATCAACAGGAGTTGAGCACCAGCAACCAAATGCAAATGGCAAGTGAGGCGGTACAGCAATCTAGCGAAAACTGCTGTGCTAACAAAGATGGTACTGAGTCAGGTTTAAGAATTATTGAGGGCAAGAATATCAAAATTGATGAAGTGCAGGAAAATGCTTTGCATGGCCAATTTTCAAGTATGTCCTGCAAGACATTTTCAGGCAGCAATTTTGACATGGATTCCAATATTGAATGCTCATTGATGTATGATGAAACAGATTTTTTAGGGACATCTGGAAAGTCTGCATCTGGAGTAGAGTAG 4212 0.406 MSVGNDIEDLVEDNFEGSNEERQIFTEFFSGNDLFQSNQRSLVSGVINFEQESNKSTFKSFGSSNENSVVWRPSSSRPTHPVEDINVIQNSKETALGCNVICDDQSDEDVVVKRMKFSLHERPCSRSNSENSFCSSGLSTVVVSNPSLAATDCGNEPIAFRLVESSKHGVISSCFLFKHDMLQSKKAATDDADDMVCKSITAEGNVVKEAFVSKVVASPVSQESFANRLVVTSPSMTIVKKSGSPLNPEEMPEGFLSSNMDIPNSSSKPDKEDRRALLQFHCVQLLMMAGWSIEKRQRPSRRHMDSVYRTPKGKPIREFTTAWRLCGQDLSVEKCNLMYADCKEWTDISQFWSDLSCALINVEKTKTQSDPAAMLAYRWLLLDPFVVVIFVDKKIGALKKGEIVKASWSLVSGKHKMTHAPIDSAQKNIGGAPFDEKHDKAFLCDSSTATETTLTALVKYHGHDQKSNGSQEDMYVMQHSPNSMECSKMSVSKSNMDLVSLHGFGLDSACTQSRASTLDIPPDSRNLNQVLEVSKVNAVHQANIRTSKCFDKERSVHLKTNQRIDGDVPMDTSKKNNANGLSHDMVHSHDSKAIKQSECSEEEGMEKSMATLFRIDNTHSDTNFILKKKMQRKCKRVSEIKPSTADHSRMLGSTDTDRVQSQNRDACGTQLALVEVHNYQVDNAGKRRNHGKLSSVSEIQQHVRKTNYSITETKKPNGCLIKDDDLLVSAIFRNKGFSPKKIRGSYRPKSCKRKFKSQKERCRLLPRNPCNGGKHNKDGKRYYLGQRTLLSWLIEHGVISLNDVIQYRNPKNGSVTKDGRITKDGIICKCCGKVLTLSEFKFHAGFTLSRPCLNLFMKSGEPFTVCLLQAWSAEYQARKSLNQAVPVDESDRNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGNWYCTNCTCRICGNLVNDKEASDAFDSLQCSQCEHKYHQKCLRERNKQELTVSDTWFCGQSCQEVYSGLQSQVGLVNQVADGFSWMLLRCIHDDQKVHSTQRLALKAVCNTKLAVALTIMEECFLSMSDPRTGIQMLPQVLYNWGSEFSRLNFQGFYTVVLEKQDVLVSVASIRVHGSSVAEMPLIATCSQYRRQGMCRLLVSAIEEMLISVKVEKLVIAAIPDLAETWTKGFGFIPVSDIEKQRLKRINLMVFPGTVLLEKPLYGKQKTGGLCDQSTLASNEMTKVGICSEEITLLPQDVRNKPTSNVGANSEYEPVDSKIQSDYKAGSETSREDNTQTVETALGAKELTETSSCYRGKTVMVGGSEKSMEGTNQQELSTSNQMQMASEAVQQSSENCCANKDGTESGLRIIEGKNIKIDEVQENALHGQFSSMSCKTFSGSNFDMDSNIECSLMYDETDFLGTSGKSASGVE* 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3742 1403 MobiDBLite consensus disorder prediction 564 603 - -
Lja3g3742 1403 ProSiteProfiles Zinc finger PHD-type profile. 894 939 IPR019787 -
Lja3g3742 1403 SUPERFAMILY FYVE/PHD zinc finger 884 937 IPR011011 -
Lja3g3742 1403 MobiDBLite consensus disorder prediction 1234 1267 - -
Lja3g3742 1403 MobiDBLite consensus disorder prediction 1234 1248 - -
Lja3g3742 1403 SUPERFAMILY FYVE/PHD zinc finger 937 988 IPR011011 -
Lja3g3742 1403 Pfam Tify domain binding domain 819 869 IPR032308 -
Lja3g3742 1403 PANTHER PHD FINGER PROTEIN 12 1 1394 IPR042163 GO:0003714|GO:0045892
Lja3g3742 1403 SMART PHD_3 938 992 IPR001965 -
Lja3g3742 1403 SMART PHD_3 896 937 IPR001965 -
Lja3g3742 1403 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1083 1170 IPR016181 -
Lja3g3742 1403 MobiDBLite consensus disorder prediction 585 603 - -
Lja3g3742 1403 CDD PHD1_AIRE 897 936 - -
Lja3g3742 1403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 939 995 IPR013083 -
Lja3g3742 1403 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1044 1194 IPR000182 GO:0016407
Lja3g3742 1403 Pfam PHD-finger 897 938 IPR019787 -
Lja3g3742 1403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 887 938 IPR013083 -
Lja3g3742 1403 Gene3D - 1068 1180 - -
Lja3g3742 1403 PANTHER INCREASED DNA METHYLATION 1 1 1394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3742 Lja-Chr3 74028367 74038238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3742 1 407 PHD Transcription Factor Family AT3G14980 32.701 2.97e-46 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja3g3742 TDBD 6.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3742 - - lja:Lj3g3v1061160.1 2811.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3742 3 74028367 74038238 Lja3g3742 3 74028367 74038238 ECH