Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3740 ATGGAGGGAGATAAAAAAGTCTCTAACTACAGTTTTCCACCTGGTTTCAGATTCCACCCCTCTGATGAGGAACTCATAGTTCATTACTTGCAAAACAAAATCAGCTCCCGTCCACTTCCAGCATCCATCATGGCTGAGATTGATCTGTACAAGTATAACCCGTGGGAGTTACCAAAGAAGTCTTTGTTTGGGGAGGAAGAATGGTATTTCTTTAGCCCCAGGGAGAGAAAGTACCCAAATGGGTTGAGGCCAAACAGAGCAGCAGCTTCAGGGTACTGGAAGGCAACTGGAATAGACAAGCCTATTATTTCTTCTTGTGGATCAAAGCGAATAGGAGTGAAGAAAGCTCTGGTCTTTTATTCAGGTCGACCTCCCAAGGGGGAAAAGACTGATTGGATCATGAATGAATATAGATTGGTTGATACAACCACCAAATCCTCCAAGCTAAAAGGTTCCATGCGGTTGGATGATTGGGTCTTATGCTGGGTTCGGAATAAAGGCTACTCATCCAAGAATTTAGGTGAAAATCAAGAGATGTCTTTTGAGCCAAACTTGCCTGCAAACCTACTGAGGAGTGAAGAGTATCCAACAAACCCAAACTTTCAAGCTGGCTTGATCAAAGATTATCAATACAAAGACTATCAGATCATAGCATCTATTCTCATTGGTGGAACTATACCTCCCACTGAGAACATGTCAAGTCTGAGATTGGAAAGCAGCAAAGGAAACCGTGTAACTTCAGTCTGTGAAGATGGTTTCGATAAAGTGATTTCTCAAACCACAATTCCTTCCTTGGGAAGTTACCTCAACCCACTGAAAAGAAAATCTAACGAGGATGATCAGTATGAAAATCTGATTTCCTTTAACAGAAAGTTCAACACTGAGAACAAAGTAGACCATTCTCCAAGCAAGGTGTTTACCAATAGAGAATTGAACTGCTATAACCAAAATCAGTCTCAAGATGACATTTTCAATGGGACCCCGCCAGATCCTAGCATCAGTTTCCAACAGCTAAACGAGATAGCATTTACTGGGAGATACACGCTGTGA 1050 0.419 MEGDKKVSNYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIMAEIDLYKYNPWELPKKSLFGEEEWYFFSPRERKYPNGLRPNRAAASGYWKATGIDKPIISSCGSKRIGVKKALVFYSGRPPKGEKTDWIMNEYRLVDTTTKSSKLKGSMRLDDWVLCWVRNKGYSSKNLGENQEMSFEPNLPANLLRSEEYPTNPNFQAGLIKDYQYKDYQIIASILIGGTIPPTENMSSLRLESSKGNRVTSVCEDGFDKVISQTTIPSLGSYLNPLKRKSNEDDQYENLISFNRKFNTENKVDHSPSKVFTNRELNCYNQNQSQDDIFNGTPPDPSISFQQLNEIAFTGRYTL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3740 349 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Lja3g3740 349 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Lja3g3740 349 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Lja3g3740 349 PANTHER NAC TRANSCRIPTION FACTOR 56 1 319 - -
Lja3g3740 349 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Lja3g3740 349 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3740 Lja-Chr3 74003205 74004753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3740 7 177 NAC Transcription Factor Family AT1G69490 66.082 3.26e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g3740 NAM 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3740 - - gmx:100817193 575.089