Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja3g3739 | ATGTCGGTGATCGAGCTTCTCTTCCGTGTCGACTCCATTTGCCAGAAATATGACAAATACGACATTGACAAGCAGCGCCAGCTCAATGCCTATGGCGATGATTCCTTCGCTCGCCTCTATGCGACAGTCGAGTCCATCATTCAAGCTGCTCTCAATAAATCTGAGGCTGCTTCCACGGAGAAGAATAGGGCGGCGGCTGCCGCGTTGAATGCGGAGGTTCGTCGTGCCAAGGGTAGATTGATGGATGAAATTCCTAAACTCCGCAAACTCGTCAATAAGAAGGTTAAAGGTCTCACAAATGAAGAAATGACCATACGTCAGGATCTTGTTATGGCATTGCCAGAAAGAATCCAAGCAATACCAGATGGTATTACTGCTGCTGCTAATCATACTGGAGGATGGGATGCTACCTCATCACACCCCCATATCAAGTTTGATTCATCAGAGGCACATTTGGACAGTGAGTATTTCAACCAAAGTGAAGAATCCAATCAGTTTCGACAAGAGTATGAAATGCGCAGGATGAAACAGGATGAAGGACTTGATATCATATCAGAGGGACTGGCTACCTTAAAAAATTTGGCTCATGACATGAATGAGGAAATAGATCGGCAAGTTCCTCTAATGGATGAAATTGACACAAAGGTGGATAAGGCAACGGCTGATGTGAGAAACACTAATGTCAGGCTGAAGAATACCCTCACCCAGCTGCGGTCAAGTCGAAATTTCTGCATTGACATTGTCTTGATGTGTGTTCTTCTGGGAATCATTACCTATATATACAATGCATTGAGGTAA | 798 | 0.4449 | MSVIELLFRVDSICQKYDKYDIDKQRQLNAYGDDSFARLYATVESIIQAALNKSEAASTEKNRAAAAALNAEVRRAKGRLMDEIPKLRKLVNKKVKGLTNEEMTIRQDLVMALPERIQAIPDGITAAANHTGGWDATSSHPHIKFDSSEAHLDSEYFNQSEESNQFRQEYEMRRMKQDEGLDIISEGLATLKNLAHDMNEEIDRQVPLMDEIDTKVDKATADVRNTNVRLKNTLTQLRSSRNFCIDIVLMCVLLGIITYIYNALR* | 266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja3g3739 | 265 | PANTHER | SYNTAXIN-72 | 1 | 262 | - | - | |
| Lja3g3739 | 265 | SMART | tSNARE_6 | 166 | 233 | IPR000727 | - | |
| Lja3g3739 | 265 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 171 | 233 | IPR000727 | - | |
| Lja3g3739 | 265 | SUPERFAMILY | SNARE fusion complex | 163 | 232 | - | - | |
| Lja3g3739 | 265 | Gene3D | - | 170 | 232 | - | - | |
| Lja3g3739 | 265 | PANTHER | SYNTAXIN | 1 | 262 | IPR045242 | - | |
| Lja3g3739 | 265 | ProSitePatterns | Syntaxin / epimorphin family signature. | 177 | 216 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Lja3g3739 | 265 | CDD | SNARE_Qc | 176 | 231 | - | - | |
| Lja3g3739 | 265 | Pfam | SNARE domain | 208 | 257 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja3g3739 | Lja-Chr3 | 73999384 | 74002306 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja3g3739 | 1 | 265 | SNARE and Associated Proteins | AT3G09740 | 63.670 | 2.81e-130 | 368 |