Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3738 ATGGAAATTGATCTGAATGATGCAGTGACTGAGGTTGACAAGAATGCATATTGCAATGGGGACTGTGAGAATTGTGCTTCTTGTGTTTGTTCTGGTTCCTCTTCAGCAATTGTGTCTTCTTCTTATCTTGAGCTATGGCATGCTTGTGCTGGCCCCCTTACTTCCCTACCAAAGAAAGGGAATGTGGTAGTCTATTTCCCACAAGGCCACTTAGAACAAGCTGCATCTTTCTCTCCCTTTTCTCCATTGGATGTTCCCACCTATGATCTTCACCCACAAATCTTCTGTAAAGTTGCCAATGTTCAACTACTTGCTAATAAGGAGAATGATGAGGTTTACACCCAAGTTACTTTGCTTCCCCAGGCAGAGTTAGAAGGAATATATTTGGAGGGCAAAGAGCTTGAGGGAGTGGGAGAAGATGTAGAGGGAAATGGAAAAACACCTGCAAAATCAACCCCTCATATGTTCTGCAAAACACTTACTGCCTCTGATACCAGCACTCATGGGGGCTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTCCCTCCTTTGCAAAGACCCTCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTTGAGTGGAAATTTCGCCATATTTATAGAGGTCAGCCGAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAAGCTTGTTTCTGGCGATGCAGTTCTCTTTCTAAGAGGTGAAAATGGAGAATTGAGATTGGGAATCAGAAGAGCTGCTCGACCGAGAAATGGTCTTCCTGAATCAATTGTTGGTAACCAGAGCTGTTATCCAAATTTCCTTTCTTCCGTGGCTAATGCCATATCCGCGAGAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCGAGTCATGCAGATTTTGTTGTGCCCTACCATAAATATGTCAGAAGCATCAAGAATCCTGTGACCGTTGGAACAAGATTCAAAATGAAATTTGACATGGATGAATCTCCAGAAAGAAGGTCGACTACAGCAGTAACTATAAATCGGTGTAGTAGTGGTATAGTCACTGGAATGAGTGATTTGGATCCCTACAAATGGCCCAAGTCAAAATGGAGGTGCTTAATGGTTAGATGGGATGAGATTGTTGAAACTAATCATCAAGATAGAGTATCTCCATGGGAGGTTGATCCTTCTGCATCTCTCTCTCCCTTGAGCATTCAAGCTTCACGAAGGCTGAAGAAACCGCGCACAGATCTGGAAGCTGACTCACCCAATCACCTAATTACTGGAGGCAGTGGGTTTATGGGCTTTGAGGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAAGTTTTATGTCACTATATTATGGATGTGACACTGTAACTAAGAAACCAGAATTTGATATCAAATCTCCAAGTCAACCTAATCTTGCATCAACTGGAGTAAGAAAGATTACTGCTGCTGCTGAGGTTATGAGGGTTCACCCTTTTAATTACGCAGGCTTCACGGAAACTAACAGGCTTCCGAGGGTCTTGCAAGGTCAAGAAATATTTCCACTGAGTTCCCTGACTGGTAAGGTTGATTTGAGCCTTGGTGGTTGGGGAAACCCCCATGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCTAGCTTTCACTCTTTAAGACCAGAACTTCTTCAAACTGCTTATTTTCCTTTTGGTGATATTCACAAAGCTGGTCAAGGATTCAGCATGTTGTGCTCCAAACCCACCAATTTCCAACGAGAGAATGTCGCGTTTAACGCTCCTTCCACTCAGTCAGGGATCATGAGAAGTGAAGTTGGACTTTCAGACCTGACCATCCCAAATGAGCAGAAGCTACAGGATAATATTTCTGGAACTGCTGCTTCTTTAGGGGCAAACATAAGGATTCTAAATGATGACAATTTCGATGGGAAGGTAAACGCTTGTAAACTATTCGGATTTCCCTTGTCTGGGGAAAGTACCTCCCAAAATTTACAGAACACTGCTAAAAGAAGTTGCACCAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACAATGACCTGCTGAGTGAACTAGAGAGGCTATTTAGCATGGAAGGCCTTCTAAGAGAACCTGATAAGGGATGGAGAGTCCTCTACACTGACCGTGAAAATGACATCATGGTTGTGGGAGATGATCCATGGCATGAATTCTGCAATGTGGTATCCAAGATTCATATATATACACAAGAAGAAGTGGAGAAGATGACAATCGGTATGATGAGTGACGATACTCAGAGCAGTTTGGAACAGGCACCACTGATTATGGAGACTTCTAAGTCCTCCTCAGTTTGTCAGCCAGATTCTTCTCCGACGGTAGTTAGAATCTAG 2409 0.435 MEIDLNDAVTEVDKNAYCNGDCENCASCVCSGSSSAIVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQAASFSPFSPLDVPTYDLHPQIFCKVANVQLLANKENDEVYTQVTLLPQAELEGIYLEGKELEGVGEDVEGNGKTPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKKLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGNQSCYPNFLSSVANAISARSMFHVFYSPRASHADFVVPYHKYVRSIKNPVTVGTRFKMKFDMDESPERRSTTAVTINRCSSGIVTGMSDLDPYKWPKSKWRCLMVRWDEIVETNHQDRVSPWEVDPSASLSPLSIQASRRLKKPRTDLEADSPNHLITGGSGFMGFEESVRSPKVLQGQENTSFMSLYYGCDTVTKKPEFDIKSPSQPNLASTGVRKITAAAEVMRVHPFNYAGFTETNRLPRVLQGQEIFPLSSLTGKVDLSLGGWGNPHVSCTNYNLHQATKPSFHSLRPELLQTAYFPFGDIHKAGQGFSMLCSKPTNFQRENVAFNAPSTQSGIMRSEVGLSDLTIPNEQKLQDNISGTAASLGANIRILNDDNFDGKVNACKLFGFPLSGESTSQNLQNTAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFSMEGLLREPDKGWRVLYTDRENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGMMSDDTQSSLEQAPLIMETSKSSSVCQPDSSPTVVRI* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3738 802 Gene3D - 670 763 - -
Lja3g3738 802 SUPERFAMILY DNA-binding pseudobarrel domain 148 263 IPR015300 -
Lja3g3738 802 Pfam Auxin response factor 278 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja3g3738 802 Gene3D - 316 399 - -
Lja3g3738 802 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 790 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja3g3738 802 ProSiteProfiles B3 DNA-binding domain profile. 156 254 IPR003340 GO:0003677
Lja3g3738 802 Pfam AUX/IAA family 665 758 IPR033389 -
Lja3g3738 802 Gene3D - 154 254 IPR015300 -
Lja3g3738 802 ProSiteProfiles PB1 domain profile. 674 758 IPR000270 GO:0005515
Lja3g3738 802 SUPERFAMILY CAD & PB1 domains 677 753 - -
Lja3g3738 802 CDD B3_DNA 154 252 IPR003340 GO:0003677
Lja3g3738 802 Pfam B3 DNA binding domain 156 253 IPR003340 GO:0003677
Lja3g3738 802 SMART B3_2 156 254 IPR003340 GO:0003677
Lja3g3738 802 PANTHER AUXIN RESPONSE FACTOR 23 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3738 Lja-Chr3 73989826 73995154 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3738 32 802 B3 DNA Binding Superfamily AT5G60450 56.978 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja3g3738 B3 7.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3738 - - lja:Lj3g3v1059090.2 1358.97