Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3724 ATGGGAAACATTATGGTAGCCCCTTCCCTTCCTCTCATATCAGGGTCAGCGGAAAACTTAGTTTTTCTTCCCCATCCACTGATGGATGGAGAAACTGACGGTGATGAGGGCTCACACAGTGGTGATGTTACCAGTCACACCACCAGTGGAGATGAGAGTAGTGAGGCGCATAATATGCCCAATCGTTCTGAGGAAATTTTGAACTATAGAGCAGAAAATGGCATGGTCTGTAGGCGATATCCTGTTAAGGAGACCACCAAACTTGTTCGCTCCGAGGATGAAGATGGGAACAGGATGGTAAATGAATATATTCGAGAGTACAAGATTGGCTCTGGTAGCTACGGCAAAGTGGTTCTTTATCGAAGCTCTATTGATGGAAAACATTATGCAATTAAGGCCTTTCATAAGTCTCACTTACTGAAGCTTCGAGTTGCACCATCTGAGACAGCCATGACTGATGTCCTACGTGAGGTGCTGATTATGAAAATGATAGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATGACTTCTTAATGGTACTAGAGTATGTGGAAGGCAAATGGATTTGTGAGGGAACAGGTCGTTCTTCTGCCTTAGGTGAAGAGTCTGCTAGGAAATATTTGCGTGATATAGTCCCGGGATTAATGTATCTTCATGCTCATAACATAGTTCATGGAGATATAAAACCTGATAATCTGTTGATCACCCGTCATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGCCAAGCTTTTGAGGATGGTAATGATGAACTTCGCCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGCCTTACGTATAATGGCAAAGCTTCAGATACGTGGGCAGTGGGAGTTACTTTGTACTGTATGATATTGGGGGAATACCCGTTTCTCGGAGACACACTTCAAGATACATATGACAAAATAGTCAATAATCCTGCTATAATCCCTGATGACATTGACCCACAGTTAAAGAATTTAATGGAAGGATTGCTTTGCAAAGACCCAAAACTAAGGATGACATTAGGCGATGTCGCGAACCACGCCTGGGTTATTGGAAATGATGGACCAATTGCTGAGTACTCATGTTGGTGCCAACGCCATAGCCTGGAGAGTTATGGATCTGATGAGAGCAATGTGCTTGTTTGA 1188 0.4335 MGNIMVAPSLPLISGSAENLVFLPHPLMDGETDGDEGSHSGDVTSHTTSGDESSEAHNMPNRSEEILNYRAENGMVCRRYPVKETTKLVRSEDEDGNRMVNEYIREYKIGSGSYGKVVLYRSSIDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMIEHPNIVNLIEVIDDPESDDFLMVLEYVEGKWICEGTGRSSALGEESARKYLRDIVPGLMYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYNGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPAIIPDDIDPQLKNLMEGLLCKDPKLRMTLGDVANHAWVIGNDGPIAEYSCWCQRHSLESYGSDESNVLV* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3724 395 ProSiteProfiles Protein kinase domain profile. 103 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3724 395 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 21 392 - -
Lja3g3724 395 SMART serkin_6 103 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3724 395 MobiDBLite consensus disorder prediction 25 60 - -
Lja3g3724 395 SUPERFAMILY Protein kinase-like (PK-like) 90 376 IPR011009 -
Lja3g3724 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Lja3g3724 395 MobiDBLite consensus disorder prediction 41 56 - -
Lja3g3724 395 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Lja3g3724 395 Gene3D Transferase(Phosphotransferase) domain 1 93 388 - -
Lja3g3724 395 Pfam Protein kinase domain 105 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3724 395 CDD STKc_LKB1_CaMKK 109 364 - -
Lja3g3724 395 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 21 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3724 Lja-Chr3 73758384 73764859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3724 98 371 CBL-interacting serine-threonine protein kinases AT5G35410 33.577 1.49e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lja3g3724 Pkinase 1.6e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3724 K00908 - gmx:100776013 630.557