Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3722 ATGAGTGCTGAGAAGGAAAAACTTGATGCAGCTTCATCCATTCATAAGGATGTTGATGATGATCCAATGGGGGTTACTGATGAATCTTCAGATGTTCATCACCTGAAGAACCATAATCTTCTCCTGGAAATGCCCTCCAGAATTTCAGAAGACTCTTCTTCTTCTGATTTTGTTGCAATAAGGATGCCATTGACGCCGAGTCCAACCCCTACTCATAAGAGAGTGAATTTTCTTGTGACTTCTCGCTCGGTTGATGCTCCAATGAGTAATAATAATAATAGTATTAATCCTGGGAATTCAGCATCAAGAGGCAAATCATCCATAAGAAGCATGTTGCCAAAATTGAACTTCAAGCACCGGAGATCATCATCAGATATTGAAAAGGCTGTTTTAACTGCTGCAGCCCCAGAAGAAAGTTCCTCCTCTGGCCCTGAAGAGAAGTCTTCAATCTCAAGAACAGTGTCCCTGACTAAGATTTTTACTCCTAAGATTAATAGAACCTCATCATTACCGGTGGAAGAAATTGGCCGCGCAAACACAGAATCTGCTCTGGGTGGATGTCTTGGTGGTTCTCCATATAGAAAAGAGGGGACTATAGCTCGCACGCGTTCAGAGCCTGTGGATAACCAAGAAAAAAGCTTAAAGAAAATGGACAAGTATTACCGAATTATTCATTCCAGCCCTCGAGTTAAGGAGTGGAATGATTGGTTGACCATGTCCAAGGCAAAGGATACTGAAAATGAAGATGATGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATATGTATGGTTGATCTATGTGAAGGAGGGGAGACGTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTCAGCATCAAAGGTAACAAGACTTGTGATGTATGCAAGGAGGAGGTTCGTAACCTCCCCGTCACTCTTTTGAGGATCCAAAATGTTCAAACTCAGAATACTGGAGCAAGGTCTCAGCAGGAAGATGACTTCAGGGTTTGGCAGGAACTGCCAGTGCTTGTCATTGTCAGCATGATTGCTTATTTCTGTTTCCTTGAGCAGCTATTGGTTAGAAAAATGGGAACCAGAGCAATTTTCATATCTCTCCCGTTTTCCTGTGTACTAGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGCAATTTCATTTGGATTTATGCAGCTGTCCAATTTGCTTTGGTGGTTATCTTTGCACACATATTTTACTCCTTGGTTAGTAAGCAAGCAGTTCTAACAATTCTTCTAGCATCATTTGCTGGGTTTGGCGTGGTGATGAGTGGAAGTTCAATTCTCGCGGAGTTTGGCAGATGGAGAAGAAGATGGCGCACTTTATCAGAGCAGCAGCATCGTTCTCAAGCGACACAAGGACAACACTCTCAAACTATAAATACCTCGCGTTCAGGCCTTCCCAACCACAGTGGAACTGTGGTATAA 1491 0.4299 MSAEKEKLDAASSIHKDVDDDPMGVTDESSDVHHLKNHNLLLEMPSRISEDSSSSDFVAIRMPLTPSPTPTHKRVNFLVTSRSVDAPMSNNNNSINPGNSASRGKSSIRSMLPKLNFKHRRSSSDIEKAVLTAAAPEESSSSGPEEKSSISRTVSLTKIFTPKINRTSSLPVEEIGRANTESALGGCLGGSPYRKEGTIARTRSEPVDNQEKSLKKMDKYYRIIHSSPRVKEWNDWLTMSKAKDTENEDDGEDIAEEEAVCRICMVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVRNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMIAYFCFLEQLLVRKMGTRAIFISLPFSCVLGLLSSMTSSTMVKSSNFIWIYAAVQFALVVIFAHIFYSLVSKQAVLTILLASFAGFGVVMSGSSILAEFGRWRRRWRTLSEQQHRSQATQGQHSQTINTSRSGLPNHSGTVV* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3722 496 PANTHER OS02G0165000 PROTEIN 25 479 - -
Lja3g3722 496 Pfam RING-variant domain 261 308 IPR011016 GO:0008270
Lja3g3722 496 MobiDBLite consensus disorder prediction 467 496 - -
Lja3g3722 496 SUPERFAMILY RING/U-box 257 312 - -
Lja3g3722 496 MobiDBLite consensus disorder prediction 135 153 - -
Lja3g3722 496 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 479 - -
Lja3g3722 496 MobiDBLite consensus disorder prediction 1 32 - -
Lja3g3722 496 MobiDBLite consensus disorder prediction 131 153 - -
Lja3g3722 496 ProSiteProfiles Zinc finger RING-CH-type profile. 253 315 IPR011016 GO:0008270
Lja3g3722 496 SMART ringv_2 260 309 IPR011016 GO:0008270
Lja3g3722 496 CDD RING_CH-C4HC3_MARCH 261 309 - -
Lja3g3722 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 316 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3722 Lja-Chr3 73726298 73731297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3722 249 315 C3H Transcription Factor Family AT2G37950 45.588 8.84e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3722 - - cam:101488558 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3722 3 73726298 73731297 Lja3g0832 3 8440875 8446097 PCT