Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3718 ATGGCGAAAGATATTGAGGTTACAGAGCAACCAGGGGAATACTCTGCCAAGGACTACAGTGACCCACCTCCAGTACCGTTGTTCGACCCGGAGGAGCTCACAAAGTGGTCTCTGTACAGAGCTGTCATAGCAGAGTTCGTAGCAACCCTTCTCTTCCTTTACATCACCGTGTTGACCATTATTGGCTACAAAAGACAGACTGACCTCGGTATTCCAGGGAACACTGAGTGTGATGGGGTTGGAATTTTGGGTATAGCTTGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTGCACCGCCGGTATCTCAGGAGGGCATATTAACCCTGCTGTGACATTTGGGCTATTCGTGGGACGCAAGGTGTCCCTGGTAAGGGCGTTACTGTACATCATTGCACAGTGCTTAGGTGCAATCTGTGGTGCTGGACTTGCTAAGGGCTTCCAAAAATCATTCTACAACAGATATGGAGGTGGGGCTAACACAATCTCAGATGGCTACAGCAAAGGCACAGCTTTGGGTGCTGAGATCATAGGAACCTTTGTTCTTGTCTACACTGTTTTCTCTGCTACTGATCCTAAGAGGAACGCTAGGGATTCCCATGTTCCTGTACTGGCACCACTTCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACAATCCCTGTTACTGGCACTGGCATTAACCCAGCAAGGAGTTTTGGACCAGCTGTTATCTTCAACGAGGACAAAGTTTGGGATGACCAATGGGTTTATTGGGTTGGACCATTTGTTGGAGCTCTGGTTGCTGCAATCTACCACCAGTACATTCTCAGAGCAGGAGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA 864 0.4838 MAKDIEVTEQPGEYSAKDYSDPPPVPLFDPEELTKWSLYRAVIAEFVATLLFLYITVLTIIGYKRQTDLGIPGNTECDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFVGRKVSLVRALLYIIAQCLGAICGAGLAKGFQKSFYNRYGGGANTISDGYSKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNEDKVWDDQWVYWVGPFVGALVAAIYHQYILRAGAIKALGSFRSNA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3718 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Lja3g3718 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Lja3g3718 287 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 SUPERFAMILY Aquaporin-like 31 273 IPR023271 -
Lja3g3718 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Lja3g3718 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Lja3g3718 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3718 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3718 Lja-Chr3 73647659 73650341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3718 1 285 Major Intrinsic Protein MIP AT5G60660 78.246 8.22e-166 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3718 K09872 - gmx:732581 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3718 3 73647659 73650341 Lja3g0838 3 8511872 8515271 PCT