Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3710 ATGGCTATGGCTTTTGTTCAAGATAGGGAAAGCAGCATTGACAGGCACCTTGATTCTTCTGGGAAATATGTGCGGTACACCGCGGGGCAGGTGGAAGCTTTGGAACGGGTTTATACTGAGTGTCCAAAGCCTAGTTCTTTGAGGAGGCAGCAGCTGATCCGTGAATGCCCGGTTCTCGCGAATGTTGAACCGAAGCAGATCAAAGTTTGGTTTCAGAATCGCAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTAGGCTTCAGGCTGTGAACCGGAAGCTGAATGCAATGAACAAATTGTTGATGGAGGAGAATGATCGGTTGCAGAAACAGGTGTCACAGTTGGTGTGTGAGAATGGGTTTATGCGCCAGCAATTGCAAGCTCCGTCAGCAGCTGGAACTACTGATGGCAATGGTGATTCGGTGGCTACTACTTCTCGGAATTCTATGAGAGATGCTAATAGTCCTGCTGGATTCCTATCAATTGCAGAGGAGACCTTAGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTGGATTGGGTCCAGTTGCCCGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTACCATTTCACAAAGTTGCAGTGGCGTGGCTGCTCGAGCGTGTGGTTTGGTTAGTTTAGAACCTAATAAGGTTGCAGAGATTCTAAAAGATCGTCTGTCTTGGTTTCGAGATTGTCGGAGTCTTGAAGTTTTCACAATGTTCCCAGCTGGAAATGGAGGGACAATTGAGCTTGTTTACACTCAGACATATGCTCCTATGACATTGTCTCCTGCCCGGGATTTCTGGACTCTAAGATACACTACAACTTTGGAAAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTCTCCGGTTCTGGTGCCGGACCAAATGCTGCTGCTGCCCATCAGTTTGTGAGGGCTGAAATGCTGCCTAGTGGCTACTTGATTCGACCGTGTGAAGGTGGAGGATCGATCATTCACATTGTAGACCACCTAAACCTACAGGCATGGAGTGTACCGGAAGTGCTGCGACCACTTTATGAATCATCAAAAGTGGTAGCTCAGAGAATGACAATTGCAGCACTTCGCTATGTCAGGCAAATAGCTCAAGAAACAAGTGGTGAAGTGGTGTATGGGTTAGGTAGGCAACCTGCTGTTCTGAGAACTTTTAGCCAAAGGTTGAGCAGGGGCTTCAATGACGCTGTCAATGGGTTCAATGATGATGGCTGGTCTGTTCTAAACTGTGATGGTGCTGAGGATGTTATTATTTCGGTTAATTCAACGAAGAATTTAAGTGGCACGTCTAATCCAGCAAGTTCCCTCACATTTGCTGGAGGAGTTCTCTGTGCAAAAGCTTCTATGTTACTTCAAAACATCCCTCCTGCTGTCTTAGTACGCTTTCTGAGGGAACATCGCTCGGAATGGGCTGATTTTAATGTGGATGCCTACTCTGCTGCATCACTTAAAGCTGGCTCGTATGCCTATCCAGGAATGAGGCCTATGAGGTTCACAGGCAATCAAATAATCATGCCTCTTGGGCATACAATTGAACATGAAGAGATGCTTGAAGTTATCCGGCTTGAAGGTCACTCTCTCGCTCAAGAAGATGCTTTTGCTTCCAGGGACGTTCATCTCTTACAGTTATGTAGTGGAATTGATGAGGATGCTGTGGGAGCTTGCTGTGAGCTCATATTTGCTCCAATTGATGAAATGTTCCCAGACGATGCTCCGTTGGTTCCTTCGGGTTTCCGCATTATCCCATTAGATTCAAAACCAGGTGATAAAAAGGACACAATGACAACAAATAAAACCTTGAATTTGACATCTGGCCTTGAAGTAGGCGCATCAACAAATCATACTGCTGGAGATGCCTCATCATGTCATAACAATCGATCAGTGTTGACTATTGCCTTCCAGTTTCCTTTTGAGAGCAGCCTACAGGATAATGTTGCGGTCATGGCACGTCAGTATGTCCGGAGCGTGATTTCCTCCGTGCAGACGGTTTCCATGGCTATATCTCCATCTGGCACAAACCCAGCTGCTGGAGCAAAACTCTCTGTTGGCTCTCCAGAAGCTTTGACGCTAGCTCGTTGGGTCTGCCAGAGTTATAGTTATTATTTGGGGACTGGACTGCTGAGATCTGATTCTCTTGTGGGTGATTTGGTACTGAAACATTTGTGGCATCATCAGGATGCCATTTTGTGTTGTTCTTTGAAGTCAGTGCCCATGTTCATATTTGCAAATCAGGCTGGGCTTGACATGTTGGAAACAACTCTTGTGGCTTTACAAGACATCACTTTGGATAAAATATTTGATGAGTCTGGCCGCAAGGCATTGTTTGCAGATTTCGCCAAGTTAATGCAGCAGGGATTTGCTTATCTGCCAGCTGGGATCTGTATGTCCACAATGGGGCGGCATGTTTCATATGAGCAAGTCATCGCCTGGAAAGTGCTTGCTGAAGAAGATAACAGTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2526 0.4612 MAMAFVQDRESSIDRHLDSSGKYVRYTAGQVEALERVYTECPKPSSLRRQQLIRECPVLANVEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLNAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQAPSAAGTTDGNGDSVATTSRNSMRDANSPAGFLSIAEETLAEFLSKATGTAVDWVQLPGMKPGPDSVGIFTISQSCSGVAARACGLVSLEPNKVAEILKDRLSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPMTLSPARDFWTLRYTTTLENGSLVVCERSLSGSGAGPNAAAAHQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSKVVAQRMTIAALRYVRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIISVNSTKNLSGTSNPASSLTFAGGVLCAKASMLLQNIPPAVLVRFLREHRSEWADFNVDAYSAASLKAGSYAYPGMRPMRFTGNQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFASRDVHLLQLCSGIDEDAVGACCELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDTMTTNKTLNLTSGLEVGASTNHTAGDASSCHNNRSVLTIAFQFPFESSLQDNVAVMARQYVRSVISSVQTVSMAISPSGTNPAAGAKLSVGSPEALTLARWVCQSYSYYLGTGLLRSDSLVGDLVLKHLWHHQDAILCCSLKSVPMFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALFADFAKLMQQGFAYLPAGICMSTMGRHVSYEQVIAWKVLAEEDNSVHCLAFSFINWSFV* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3710 841 CDD homeodomain 22 82 IPR001356 GO:0003677
Lja3g3710 841 MobiDBLite consensus disorder prediction 127 152 - -
Lja3g3710 841 SMART HOX_1 19 85 IPR001356 GO:0003677
Lja3g3710 841 SMART START_1 161 371 IPR002913 GO:0008289
Lja3g3710 841 CDD bZIP 74 113 - -
Lja3g3710 841 Coils Coil 77 118 - -
Lja3g3710 841 SUPERFAMILY Homeodomain-like 18 85 IPR009057 -
Lja3g3710 841 Pfam MEKHLA domain 697 840 IPR013978 -
Lja3g3710 841 ProSiteProfiles 'Homeobox' domain profile. 17 81 IPR001356 GO:0003677
Lja3g3710 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 841 - -
Lja3g3710 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 841 IPR044830 GO:0003700
Lja3g3710 841 CDD START_ArGLABRA2_like 156 372 - -
Lja3g3710 841 Gene3D - 16 88 - -
Lja3g3710 841 Pfam START domain 162 370 IPR002913 GO:0008289
Lja3g3710 841 ProSiteProfiles START domain profile. 152 380 IPR002913 GO:0008289
Lja3g3710 841 Pfam Homeodomain 22 80 IPR001356 GO:0003677
Lja3g3710 841 Gene3D - 194 377 IPR023393 -
Lja3g3710 841 SUPERFAMILY Bet v1-like 161 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3710 Lja-Chr3 73536750 73543518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3710 1 841 Homeobox Transcription Factor Family AT5G60690 79.623 0.0 1399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g3710 START 1.2e-47 CL0209