Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3707 ATGAAGGAAGCTGACAGAAGCAGCTTGGATCCACAGCTATGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTCTACTTCCCACAGGGGCACGCGGAACACGCACAGTGCAGCGTGGACTTCGCAGCTTCCCTAAGAATCCCACCGCTCATCCTCTGCCGCGTCGCCGCCGTGAAATTCTCCGCCGACCCAGAAACCGATGAAGTGTTCGCCAAGATGAGGCTGGTTCCCCTGAGAAACTCAGAGCTTGATCACGAAGATGGCGGTGATGGTGCTTCTGATGGAAACGCCACCGAGGGTTCAGAGAAGCCAGCGTCGTTCGCCAAGACGTTAACACAGTCCGATGCTAACAACGGTGGCGGTTTCTCTGTTCCGCGGTACTGCGCGGAGACCATTTTCCCACGGCTGGATTACTCGGCTGAACCGCCGGTTCAGACCGTCATCGCCAAGGACGTTCACGGCGAGGTTTGGAAGTTCCGGCACATATACAGAGGCACGCCGCGCCGGCACTTGCTGACAACCGGGTGGAGCAGTTTTGTCAACCAGAAGAAGCTCGTTGCAGGGGACTCTGTCGTGTTTCTGAGAGCTGAAAACGGCGATCTCTGCGTCGGGATTCGCCGGGCCAAGAGGGGTATCGGCGGCGGGGCAGAGGTGCCGTCCGGGTGGAGTTCCGGCGCCGGTGCCGGAAACTGCGGTCTTGGGCCTTATGGGGCTTTTTCTGTGTTCTTGAGAGAAGAAGGTAAGCTTTTGAGGAATGGTTGTGGCGGTGGCAACTCGAGTCCTGGCGGTGTTGGAAGGCCAAAAGTGAGTGGTGAATCTGTGAGGGAAGCTATGGCATTGGCTGGGAGCAATCAAGCTTTTGAGGTTGTTTACTATCCGAGAGCTAGTACTCCTGAGTTTTGCATCAAGACTTCAGCTGTGAAAGCTGCTATGAGGATTCAATGGTGTTCTGGGATGAGGTTTAAGATGCCATTTGAAACTGAGGATTCTTCAAGGATAAGCTGGTTTATGGGGACCATAGCTTCTGTTCAGGTTGTTGATCCTATACGTTGGCCTAATTCCCCTTGGAGACTTCTTCAGGTTACTTGGGACGAGCCAGATTTGCTACACAATGTGAAGCGTGTAAGCCCGTGGCTGGTTGAGTTGGTCTCAAACATGTCAACCATCCACCATCTCACACCCTTCTCTCCTCCGCGGAAGAAGCTCCGGTTTCCGCCACACCCGGACTTCCCGCTTGACATTCAATTTCCGTTACCGGCGTTTTCAGGCAACCCCCTCGGGCCTAGCAGCCCCTTGTGTTGTCTATCTGACAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTCTCAGATATCCACCTCCACAACAAACTGCAGTTGGGGGTGCTTCCAACTAACATAACCAACCATGATCATAAAAGCAAGGAAAGCTTATCATGCTTGCTCACCATGGGAAATTCTCAAAAAAGTTTGGAGAAATCTGATGATGATGTGAAGAGACACCAATTTTGGCTTTTTGGTAAACCGATACTCACTGAGCAACAAATTTCTAGAAGAAGAGCTTCTAGTGATGATGATAATGTGTTGTTGTCTCAGAATTGTAATTCACCAAAGAAAGAGAAGTGGTTTTTTGGTGACTCTCAAATCCAATCATCACCAGAAAAGTCTTCTACTACTTCTAGTGGTGAATTCTCTTGGCAACTTGGTTTGGACACTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTGGGAAGAACACTGGACCTGTCACGTGTTGGTTCTTATGAAGAGCTTTATAGGAGACTGGCCAACATGTTTGGAATGGAAAGGTCTGAGCTGTTGAGTCATGTGCTCTACCGTGACTCCACAGGTGCTGTTAAACATACTGGTGAAGAACCCTTCAGTGACTTCATGAAGACAGCAAAAAGATTGACCATTCTGACAGATTCTGCAGGCAGCAAAGATACTAGAAGGGTCTTGATTACAGGAACTAGGAATGCTGAACGTGGATTGGATGCGTCAAATAAGACAGGTCCTCTGAGTATATTTGCTTAA 2097 0.5041 MKEADRSSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQCSVDFAASLRIPPLILCRVAAVKFSADPETDEVFAKMRLVPLRNSELDHEDGGDGASDGNATEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGGGAEVPSGWSSGAGAGNCGLGPYGAFSVFLREEGKLLRNGCGGGNSSPGGVGRPKVSGESVREAMALAGSNQAFEVVYYPRASTPEFCIKTSAVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNMSTIHHLTPFSPPRKKLRFPPHPDFPLDIQFPLPAFSGNPLGPSSPLCCLSDNAPAGIQGARHAQIGISLSDIHLHNKLQLGVLPTNITNHDHKSKESLSCLLTMGNSQKSLEKSDDDVKRHQFWLFGKPILTEQQISRRRASSDDDNVLLSQNCNSPKKEKWFFGDSQIQSSPEKSSTTSSGEFSWQLGLDTGHCKVFLESEDVGRTLDLSRVGSYEELYRRLANMFGMERSELLSHVLYRDSTGAVKHTGEEPFSDFMKTAKRLTILTDSAGSKDTRRVLITGTRNAERGLDASNKTGPLSIFA* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3707 698 PANTHER AUXIN RESPONSE FACTOR 2 674 - -
Lja3g3707 698 CDD B3_DNA 113 214 IPR003340 GO:0003677
Lja3g3707 698 ProSiteProfiles PB1 domain profile. 585 665 IPR000270 GO:0005515
Lja3g3707 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja3g3707 698 Pfam Auxin response factor 285 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja3g3707 698 SMART B3_2 114 216 IPR003340 GO:0003677
Lja3g3707 698 Gene3D - 584 668 - -
Lja3g3707 698 MobiDBLite consensus disorder prediction 88 112 - -
Lja3g3707 698 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Lja3g3707 698 SUPERFAMILY DNA-binding pseudobarrel domain 109 217 IPR015300 -
Lja3g3707 698 Gene3D - 112 216 IPR015300 -
Lja3g3707 698 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Lja3g3707 698 Gene3D - 322 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3707 Lja-Chr3 73501618 73506029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3707 1 663 B3 DNA Binding Superfamily AT4G30080 59.178 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja3g3707 B3 3.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3707 - - gmx:100778135 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3707 3 73501618 73506029 Lja3g0846 3 8599761 8603774 PCT