Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3706 ATGAACGACTCTTGGCTCTTGGATGAGATGCTTGATGATCCCAAGTTTTTTGATTTCCCTATGGAAGATTTGGAACCTAATGCTATGGAAGAAGACTGGGCTGCTCAATTTAAACGCCTTAACGAGCCGTGTTTTGATGCTTTTTCAGTAGTAGCGCCACTTGGGCATTGTGGCGAAACCCAAAATGAAAAACCCCAACTTGGAAAGGGTTTCCCTGCTTCTTGTACTGGGATTTCCCCAATAAAACAACCTCGAAAGACTAGTGGACCAACATATGGAAAAACCATTCCGAAACAGAACGTTGCTTTCAATGGAAAAGACCTGCATCGGTTGCGAACCTACAGTCCAGTTTCTGTTTTTGAAAGCAGTAGTTCCTCCTCAGTTGAGAACTCCAACTTTGATCTTCCTGTCATCCCAGCGAAGCGTGCTCGAAGTAAACGTCTGCGTCCTTCAAGCTGCAGTTCTCTATTCTCAGTTCCTTTCATCCTTAATTCACCAGCTTTGCGAAAGCATCAAAGCACACCTGCCTCTGAATCAGATTTAGAAACAGGCGATGCTGAGAAACTACTTAACAAGGCAAAGAAACAGAGGAAAAAGGATCTCTTCATGCTTTCGGATGATGCCGAGATGAAGAGATTCTCATCACAGGGTTCAGCTGTCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAAGGACCTATGGGTCCCAAGACGCTATGCAATGCTTGCGGTGTTCGGTACCGGTCGGGCCGCCTCTTCCCTGAATACCGGCCTGCAGCTAGCCCAACTTTTGTACCAGCAGTGCACTCAAACTGTCACAAAAAGGTCCTGGAGATGAGAGGAGCCATTTAG 870 0.4644 MNDSWLLDEMLDDPKFFDFPMEDLEPNAMEEDWAAQFKRLNEPCFDAFSVVAPLGHCGETQNEKPQLGKGFPASCTGISPIKQPRKTSGPTYGKTIPKQNVAFNGKDLHRLRTYSPVSVFESSSSSSVENSNFDLPVIPAKRARSKRLRPSSCSSLFSVPFILNSPALRKHQSTPASESDLETGDAEKLLNKAKKQRKKDLFMLSDDAEMKRFSSQGSAVPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVPAVHSNCHKKVLEMRGAI* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3706 289 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Lja3g3706 289 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 56 286 - -
Lja3g3706 289 MobiDBLite consensus disorder prediction 80 97 - -
Lja3g3706 289 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Lja3g3706 289 SMART GATA_3 218 268 IPR000679 GO:0006355|GO:0043565
Lja3g3706 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 217 279 - -
Lja3g3706 289 CDD ZnF_GATA 223 270 IPR000679 GO:0006355|GO:0043565
Lja3g3706 289 PANTHER GATA TRANSCRIPTION FACTOR 56 286 - -
Lja3g3706 289 Gene3D - 218 268 IPR013088 GO:0006355|GO:0008270
Lja3g3706 289 MobiDBLite consensus disorder prediction 78 97 - -
Lja3g3706 289 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3706 Lja-Chr3 73482078 73486273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3706 6 286 C2C2-Gata Transcription Factor Family AT1G08010 37.895 2.86e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lja3g3706 GATA 3.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3706 - - gmx:100778675 372.089