Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3699 ATGAAGCCTCAACATAAAGTTGCTGTTGCTCTTGTTATTAGCTTGCTCAGGATTCAGTACTCATTTTGTGGTAAACCTTCTGATCCTGGTCTAAACAAGTGGAAATGTAGATGTACTTCTTTCCAAAGGAACCACAGATACCCTCTTGCCAATTGTTCTCAATCATGTCATTGCCATTCAGATGCTAAAGAGCGTGGGTCCTTATGGACATGCTTATGTGGTCCAGACGGGTTCCCTAAAGTGGCAGTAGGTGGCCATAATCCTAATTGCTTTAATGCCTGTGACTGCACCTGGGGAAATTTTAGGATGGCATTGGGTTCAAAGAAACATATTTCAAGCAAGATCGTATTAGTTATTCTAATAATATGTGTTATATGCACAACTATTGGATTTCTCGCCTCAGTTACTTGTTATGTCTGCCGAAGGGAGAGATATCCTATTCAATCACCAATGATCTCGTCAGATAAGGAAACGAGTTACAGTAGTGCCTCCAACTTTATCAGTAATAGGACTTCTCCAGTGCCAGAAACAAAAGTCACTATAAACTCTCCTATTAGTCATATTAAAGGATGCTTTCAGAAGGCCTCTTTCTTGTTTGCAAGTCAAAGAGAAACCTTTCATGGAAACATTATTCAATTTTCGTTCGTTGAACTGGAAAATGCCACTGATAACTTTTCAGCTTCCAACCTAATTGGACTAGGTGGAAGTAGTTATGTATACCGTGGTCAGCTAAAAGATGGTGGTTATGTGGCAGTCAAGCGACTAAAAGATCAAAGAGGGCCTGAAGCAGACTCTGAGTTCTTTACAGAGATTGAACTATTAGCTAGACTTCATCATTGCCATCTGGTACCATTGATTGGATACTGCTCAGAACTAAAAGGAAAAAGTGTTCAGAGGTTACTAGTGTTTGATTACATGAGTAATGGTAATCTGAGAGACCGTTTAGATGGAATTTTTGGACAAAATATGGATTGGGCTACTCGTGTTTCAATTGCATTAGGAGCTGCAAGGGGCTTGGAGTATCTTCATGAAGCAGCTGCTCCAAGAATTCTTCACAGAGATGTCAAATCAACAAACATTCTTCTGGATAAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACCTTAGAGCTGATGACATCCCCGGTTGTTCAGATTCCTCGGAAAGAATGAAGGGTACATTTGGCTATTTTGCACCTGAGTATGCAATTGTTGGTAGAGCCTCTCTTGAGTCGGATGTCTTCAGTTTTGGGGTGGTTCTTCTTGAGATTATCAGTGGTCGGCATCCCATCCATAAATCTGCAGGCAAAGAAGAAAGCCTTGTTGTATGGGCTACTCCTCGTTTACAAGATGGTAGGCAAGTTATAACAGAGTTGGTTGATCCGCAGTTGAAAGGAAACTTCCCAGAAGATGAGGTGCGAATAATGGCATACTTAGCAAAGGAGTGCTTATTGTTGGATCCTGAGACTCGACCAACTATGAGTGAAGTGGTTCAAATTCTTTCAAGTATTTCCCCAGGCAATAGGAGAAGGAGAAACATTCCGATGGGCCTTTTTCAGGAACTAGAGAACATAGAGAAGCAAAGACAAGCTCCACCGTGTAGATTTCCAGCGCACAATTTATCACCACTTGGTATTGACCACAATCTTCATGTTGGAAACAGAAATAAAGATGCAGATACAGATACAGTTTCAACTGAGCATATGGAGAGTATGATCCTCTTGACTTCAAAAGGTGAGAACTGGCATGCATTTGAAGAGGAAATGGTAGACCTAACTGAGCCTCGGTTTGAATCATTTTGCATGACTAACATCGATTACTCTTGA 1836 0.408 MKPQHKVAVALVISLLRIQYSFCGKPSDPGLNKWKCRCTSFQRNHRYPLANCSQSCHCHSDAKERGSLWTCLCGPDGFPKVAVGGHNPNCFNACDCTWGNFRMALGSKKHISSKIVLVILIICVICTTIGFLASVTCYVCRRERYPIQSPMISSDKETSYSSASNFISNRTSPVPETKVTINSPISHIKGCFQKASFLFASQRETFHGNIIQFSFVELENATDNFSASNLIGLGGSSYVYRGQLKDGGYVAVKRLKDQRGPEADSEFFTEIELLARLHHCHLVPLIGYCSELKGKSVQRLLVFDYMSNGNLRDRLDGIFGQNMDWATRVSIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNWQAKITDLGMAKNLRADDIPGCSDSSERMKGTFGYFAPEYAIVGRASLESDVFSFGVVLLEIISGRHPIHKSAGKEESLVVWATPRLQDGRQVITELVDPQLKGNFPEDEVRIMAYLAKECLLLDPETRPTMSEVVQILSSISPGNRRRRNIPMGLFQELENIEKQRQAPPCRFPAHNLSPLGIDHNLHVGNRNKDADTDTVSTEHMESMILLTSKGENWHAFEEEMVDLTEPRFESFCMTNIDYS* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3699 611 ProSitePatterns Protein kinases ATP-binding region signature. 231 253 IPR017441 GO:0005524
Lja3g3699 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Lja3g3699 611 Pfam Protein kinase domain 227 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3699 611 Gene3D Transferase(Phosphotransferase) domain 1 306 519 - -
Lja3g3699 611 SMART serkin_6 225 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3699 611 PANTHER OS01G0253100 PROTEIN 2 605 IPR045271 GO:0004714|GO:0006468
Lja3g3699 611 CDD STKc_IRAK 231 507 - -
Lja3g3699 611 Gene3D Phosphorylase Kinase; domain 1 198 305 - -
Lja3g3699 611 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 605 - -
Lja3g3699 611 SUPERFAMILY Protein kinase-like (PK-like) 205 504 IPR011009 -
Lja3g3699 611 ProSiteProfiles Protein kinase domain profile. 225 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3699 Lja-Chr3 73314783 73319869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3699 1 608 Receptor kinase-like Gene Family AT2G28250 51.140 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Lja3g3699 Pkinase 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3699 - - lja:Lj3g3v1089410.1 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3699 3 73314783 73319869 Lja3g0865 3 8734893 8742064 PCT