Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3693 ATGAGTGGCTTAAGGCCTGAGTCTCATGTAGCACAGCAATTTAGGCGTGAGAAACTGAGAATCCAGAACATTTCCCATCATTATCAAGACTTCCCTCACAATCTGGAACATTTGTCTTCACACCAAGGGTTCAACATGGATCTTCTTCAGGTCAGAAATGTTAGAAATGCCAACAACATGCTTGATGAACCGGCTGCAATTTATTCATCAGAAATTCCCAACTTCTCCTTCACTTCAAATCCTTCTCCAAGGTTGGAGTATCAAGAACTAGGTGAACCTAGTAGGCTAATGATGCATCATCAATATGGTTCTTTTCCCCACCAAACCAGTGATTTGAACATTGTAAACTATGCAAGCAACAACAACAACACTTTTCATGCTTATGAACCCAACAATGGTGTATATGCTAATATCATGGTGCAGAATGAGAATCCCTCTGCTTTATATCAAAGTGCTTGGAATGATGTAGCGAAAATAGCTTCACTGATGCAGCAAAATGGCCAAGGCATTTGGGAAGGGGATGCTAGTACTGAATCTGAACAACAACACCAACCAAGCTTTGGAAATCAGAATCACCTAAATCAATTGCGTTTTGGGTGGACTAATCCTATTCCTCTGTGTTTCACAGACAAAAAGATTGATGTAGATTCAAATCCTCAAAGCTTGTCCTTATCACTCTCATCATCATCAAATGCTTGTGTTAATTCTCAGTTTGAAGAAGGGTCTGTATCTAGAGATTGTGGGAAATCACCACAAGACATGGTTTCAAGGACTAGTTTTAGAAATGTGGGTCCCCTTGGCCCTTTCACTGGCTATGCTACTATTCTCAAGAGTTCAAGGTTTTTGAAGACTTCTCAAGATTTGTTAGAAGAGTTTTGTTATTGTGTATCTGGTAAGAAATTGGCCAAAAGATGTGATCTTTCTGAGAGGGTTTCTGAGGATGCTTGTGGTTCTACTTCTACTGATGTTGTCACTGTCGCTGTCAATCAAACTGGGGCTGCTTCGAAAGCTAGCAATTCAGGTTCTTCATCATCTATGTTTCATGTTTCAAGTGAAAATAGAGGTGCTGATTGGGGGGCTGGAAGTACTAGCTGTGGTGTTTCTTCTCTGCTGGATTATCAACAGAAGAAAGCAAAGCTTCTGTACATGCAAGAAGAGGTCACCAGGAGATACAAACAGTACCATCAACAAATGCAAATGGTTGTTTCATCCTTTGAATCTGTGGCAGGTCTAAGTTCAGCTACTCCTTACATGTCAATGGCTTTCAAGTCGGTTTCAAAACACTTCAGGTGCCTTAACAATTCTATCTCAGATCAGGTCAAGCTTATAAGCCAAGTCTTGGGAGAGGATTTGACAATACCCAACACAAGTGCTAGTAGTAAAATTGACACTAATAATATGGCATTAAGGCTAAGGTGCATGGACCAAAGCTTGCAAAATAACAAATCTAGCAGGGGCGCCATAACCCTTCTTGAACAACAACTACAGCATCATCATGTTTGGAGGCCCCAGAGAGGGTTACCGGAACGTGCAGTGGCGATTCTTAGAGCGTGGTTGTTTGAGCATTTTCTTCATCCTTACCCCACAGACACTGATAAACACATGTTGGCTATGCAAACAGGTCTTTCGCGAAACCAGGTATCAAATTGGTTCATCAATGCTCGTGTCCGCGTGTGGAAGCCAATGGTTGAGGAAATACACACACTTGAAACCAAAACAACAAGTGCCAAAGACAACACTATTAAAAATGAGGGAACTTGTGGCACTGAAATTGGTAGTACCAGCATGCAGCCTATTGTCGATAAGTCTCTGAGCAAGTTTGGCATGCATACAGTGCCTGAAAACCAAATCCAGAGTATGGAAATGGGTTCATCCATAAATGCTGAGGGATTAAATGCAGAACAATGGAGTCAAGAGAAGCGGTCTAAATTGGAATACCAAATGAGTTCAGGCATGGATGGCACTGTTATGGGTTTATTGCCATGCAGAAATGGTGGAATTGAGGTTGGGGGACTCGGGTCCGTGTCACTGACATTGGGCCTTAGGCATGGCTTTGAAGGAATGCAACACCAGCATCAACAACTACAAGAGGAACAGCTTAGGCATCACCTTGGAGGGCAAATGATACATGACTTTGTAGGGTGA 2145 0.421 MSGLRPESHVAQQFRREKLRIQNISHHYQDFPHNLEHLSSHQGFNMDLLQVRNVRNANNMLDEPAAIYSSEIPNFSFTSNPSPRLEYQELGEPSRLMMHHQYGSFPHQTSDLNIVNYASNNNNTFHAYEPNNGVYANIMVQNENPSALYQSAWNDVAKIASLMQQNGQGIWEGDASTESEQQHQPSFGNQNHLNQLRFGWTNPIPLCFTDKKIDVDSNPQSLSLSLSSSSNACVNSQFEEGSVSRDCGKSPQDMVSRTSFRNVGPLGPFTGYATILKSSRFLKTSQDLLEEFCYCVSGKKLAKRCDLSERVSEDACGSTSTDVVTVAVNQTGAASKASNSGSSSSMFHVSSENRGADWGAGSTSCGVSSLLDYQQKKAKLLYMQEEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYMSMAFKSVSKHFRCLNNSISDQVKLISQVLGEDLTIPNTSASSKIDTNNMALRLRCMDQSLQNNKSSRGAITLLEQQLQHHHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLAMQTGLSRNQVSNWFINARVRVWKPMVEEIHTLETKTTSAKDNTIKNEGTCGTEIGSTSMQPIVDKSLSKFGMHTVPENQIQSMEMGSSINAEGLNAEQWSQEKRSKLEYQMSSGMDGTVMGLLPCRNGGIEVGGLGSVSLTLGLRHGFEGMQHQHQQLQEEQLRHHLGGQMIHDFVG* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3693 714 Pfam Associated with HOX 275 437 IPR006563 -
Lja3g3693 714 ProSiteProfiles 'Homeobox' domain profile. 498 561 IPR001356 GO:0003677
Lja3g3693 714 SMART prehox3 270 438 IPR006563 -
Lja3g3693 714 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 32 685 - -
Lja3g3693 714 Pfam Homeobox KN domain 518 557 IPR008422 GO:0003677|GO:0006355
Lja3g3693 714 CDD homeodomain 501 562 IPR001356 GO:0003677
Lja3g3693 714 SMART HOX_1 501 565 IPR001356 GO:0003677
Lja3g3693 714 Gene3D - 504 566 - -
Lja3g3693 714 SUPERFAMILY Homeodomain-like 503 567 IPR009057 -
Lja3g3693 714 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3693 Lja-Chr3 73196757 73203085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3693 372 582 Homeobox Transcription Factor Family AT4G34610 51.402 7.37e-63 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja3g3693 POX 2.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3693 - - lja:Lj0g3v0269339.1 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3693 3 73196757 73203085 Lja3g0871 3 8799984 8805223 PCT