Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3678 ATGGCCAAGAATATTATCAGAAAGAAGGGTAGTAATAGTACTAGTAGTAGTGGAGGTGGCATTGTGAGCCTCAAATTTGTAGTTGAGAAGCTTCCCAAGAAGCTCTTACTAAGAAGAAACAAAAAAGCAAGTTCAAATTTTGATCAGCAATACAAAGAAGAAGCTTGCTATGATTCTGCCTCCTCTGTGCCAGAGGATGTGAAGGAAGGGCATTTTGCTGTGATTGCTGAAGGAAGGGAAGAAGCTGAAGCAAAGAGATTTGTGCTTCCAATAAGCTGTTTATCAAACCCTATTTTCTTGAGGCTGTTGGAGCAAGCAGCTGAAGAGTATGGATTTGAACATGAAGGTGCAGTCACCATTCCTTGCAGGCCTTGTGAGCTTGAGAGGATACTTGCTGCACAACAATGGCTTCAAGATGATGGATCATCAGATGATGCTGGAAGCTGGAATTCCTGTGATAACTCCATGGTTTCTCAAAACTACTACTCATAA 492 0.4167 MAKNIIRKKGSNSTSSSGGGIVSLKFVVEKLPKKLLLRRNKKASSNFDQQYKEEACYDSASSVPEDVKEGHFAVIAEGREEAEAKRFVLPISCLSNPIFLRLLEQAAEEYGFEHEGAVTIPCRPCELERILAAQQWLQDDGSSDDAGSWNSCDNSMVSQNYYS* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3678 163 Pfam Auxin responsive protein 46 132 IPR003676 GO:0009733
Lja3g3678 163 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR32-LIKE 42 135 - -
Lja3g3678 163 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 42 135 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3678 Lja-Chr3 72949626 72950117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3678 64 145 Calmodulin-binding Proteins AT3G43120 40.964 1.20e-13 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3678 3 72949626 72950117 Lja3g3678 3 72949626 72950117 ECH
Lja3g3678 3 72949626 72950117 Lja3g0885 3 8958233 8958580 PCT