Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3677 ATGGTGTCTGACGCGAGCAAGAAGAAGGCGGCACAGAAGAAAGCGGCCGCGGCGGCTAAGAGAGGAGGCAAGGCGGCTACCGCTGCGGCTTCGTCGAAAGCGGCGGCGTCTGACAAGGCTGCCGACAAGCTCGCTAATGGAATTGCGGATATGCAGATTTCCGATCGGACCTGTACCGGCGTCCTCTGTTCGCATCCTCTCTCGAGGGATATTCGGATAGAATCTCTATCAGTTACTTTTCATGGACATGATCTGATAGTCGATTCTGAGTTGGAGCTGAATTATGGAAGACGTTATGGGTTGCTTGGGTTAAATGGTTGTGGAAAATCTACCCTGCTTACAGCAATAGGTCACCGAGAACTTCCTATACCAGAGCACATGGATATTTATCACCTTACCAGGGAGATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCGTGAGCTGTGATGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAACTTTGGCAGCACAGGATGATGGGGGTGGTGAAACTCTCGAACGTATTTATGAACGATTAGAAGCCTTGGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTACACGGTCTTGGGTTCGACAAAAAGATGCAGGCAAAGAAGACTCGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCACGAGCTCTATTTATCAACCCGACCATTCTTCTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGCTGGAGGAGAGTTTGAAGAATTTTGACCGTATTATGGTTGTGATTTCACATTCCCAGGATTTTCTTAATGGTGTCTGCACGAATATCATTCACATGCAAAGCAAACAATTGAAGATGTATACTGGTAATTATGATCAATATGTTCAGACACGATCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAGTGGGAGCAGGAACAGATTTCCAACATGAAAGAATACATTGCCCGATTTGGGCATGGATCAGCAAAATTAGCTCGCCAAGCTCAGAGTAAGGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTTACAGAGAAGGTAGCAAGAGACTCAGTTTTGGTATTCCGCTTTGTTGACGTGGGAAAACTTCCACCACCTGTGCTCCAGTTTGTTGAAGTGTCATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATTGACTTTGGAGTTGATTTAGACTCCAGGATTGCTCTTGTTGGACCCAATGGAGCTGGGAAGAGTACATTACTGAAACTAATGACAGGTGAATTGGGTCCTACAGATGGCATGGTTCGACGCCACAATCACCTTCGCATTGCACAATATCACCAGCACTTGGCTGAAAAGCTGGACATGGAAATGTCTGCTCTTCTGTATATGATGAGAGAGTACCCTGGAGTTGAGGAAGAGAAGATGAGAGCAGCTATTGGGAAGTTTGGACTGTCGGGCAAAGCGCAGATCATGCCTATGAAGAACTTATCTGATGGGCAGAGGAGCCGTGTGATATTTGCATGGTTAGCTTATAGACAGCCTCAGATGCTACTTTTGGATGAACCAACTAATCATTTGGATATTGAAACAATTGACTCACTGGCTGAAGCATTGAATGAATGGGATGGTGGTCTGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAGGTAGCCCATGAGATATGGGTGTGTGAAAATCAAGCTGTGAAAAAATGGGAGGGTGGTATTATGGACTTCAAGCGACATCTCAAGGCAAAGGCTGGTTTATCTGACTAA 1794 0.4543 MVSDASKKKAAQKKAAAAAKRGGKAATAAASSKAAASDKAADKLANGIADMQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGHRELPIPEHMDIYHLTREIEASDMSALEAVVSCDEERLRLEKEAETLAAQDDGGGETLERIYERLEALDASTAEKRAAEILHGLGFDKKMQAKKTRDFSGGWRMRIALARALFINPTILLLDEPTNHLDLEACVWLEESLKNFDRIMVVISHSQDFLNGVCTNIIHMQSKQLKMYTGNYDQYVQTRSELEENQMKQYKWEQEQISNMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVARDSVLVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELGPTDGMVRRHNHLRIAQYHQHLAEKLDMEMSALLYMMREYPGVEEEKMRAAIGKFGLSGKAQIMPMKNLSDGQRSRVIFAWLAYRQPQMLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFRLINQVAHEIWVCENQAVKKWEGGIMDFKRHLKAKAGLSD* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3677 597 Gene3D - 71 335 IPR027417 -
Lja3g3677 597 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 597 - -
Lja3g3677 597 CDD ABCF_EF-3 71 288 - -
Lja3g3677 597 PANTHER - 1 597 - -
Lja3g3677 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 320 IPR027417 -
Lja3g3677 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 575 IPR027417 -
Lja3g3677 597 ProSitePatterns ABC transporters family signature. 215 229 IPR017871 GO:0005524
Lja3g3677 597 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g3677 597 Pfam ABC transporter 282 355 IPR032781 -
Lja3g3677 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 71 311 IPR003439 GO:0005524
Lja3g3677 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 597 IPR003439 GO:0005524
Lja3g3677 597 SMART AAA_5 95 297 IPR003593 -
Lja3g3677 597 SMART AAA_5 407 574 IPR003593 -
Lja3g3677 597 Pfam ABC transporter 398 529 IPR003439 GO:0005524
Lja3g3677 597 Pfam ABC transporter 89 243 IPR003439 GO:0005524
Lja3g3677 597 Coils Coil 289 309 - -
Lja3g3677 597 Gene3D - 350 595 IPR027417 -
Lja3g3677 597 CDD ABCF_EF-3 382 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3677 Lja-Chr3 72928284 72932549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3677 382 575 Calmodulin-binding Proteins AT2G36910 25.446 1.15e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3677 K06185 - gmx:100809491 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3677 3 72928284 72932549 Lja3g3677 3 72928284 72932549 ECH
Lja3g3677 3 72928284 72932549 Lja3g0886 3 8960039 8964592 PCT