Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3674 ATGCAGAGATCTGGCTATGGCTCCGATGGAATCTACAGGTCTCTGCGACCCTCTCTGGTCACACCGAAGAACCCAAACCTCTCTCTCGTCTCACACCTCTTCACCAAGGTCTCATCATTCCCCACAAAACCCGCACTCATCGACGCCGATTCCAACCAAACGCTTTCGTTCTCCGAGCTGAAAACGCTCACCGTTAAACTCTCCCACGCCCTCCTCCACCACTTCAACCTCGCCAAAAACGACGTCGTCCTCTTCCTCGCCCCCAACAGCTTCCTCTACCCTGTTTGCTTCCTCGCTGTCACTTCCCTCGGCGCCGTCGTCTCCACCGTCAACCCCACGTATACTCTCCCCGAAGTCTCCAAACAAGCTAACGACTCCGCCCCGAAGCTCGTCATCACGGTTGCGGAGTTATGGGATAAGGTCAAACACCTCAACATCCCCGCCGTGTTCCTGGAACCCACCACGGTGCCGGATTCGAGTGTTATCAATATCGATGAGCTGATTGGGCTTGAACTTGCTGGGTCGGTGACTGATTTTCCGGCGAGGGATATCAAGCAGGGAGATACGGCGGCGCTGCTGTATTCATCGGGGACGACGGGGGTGAGCAAGGGAGTGATTCTCACGCACGGGAATTTCATTGCTGCTTCTTTGATGATTGGGTTGGATGATGAATTGGCAGGGCAGATGCACGATGTGTTTCTCTGCGTTTTGCCGATGTTTCATGTGTTTGGGTTTGCGGTTATCACGTACTCGCAGCTTATGAGAGGGAATGCGGTGGTGTCGTTGAAGAGGTTTGAGTTTGAGCTGGTTTTGAAGACGGTGGAGAAGTATAAGGTGACGCATTTGTGGGTTGTGCCTCCGATTGTGCTTGCTTTGGCGAAGCATGGTTTGGTTGATAAGTATGATCTTTCTTCGTTGAAGCATATTGGTTCTGGTGCTGCACCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCCAAGCGTTTCCCTAATGTCATTGTTTGTCAGGGTTATGGTATGACTGAGACTTGTGGGATTGTTTCGGTGGAGAATCCGAGGATGGGGGTTCGGCATACTGGCTCAACTGGAATGCTTGTCGCGGGAGTGGAAGCTCAAATTGTGAGTGTGGATACCATGAAGCCCCTACCTCCTGGACAGTTGGGGGAGATCTGGGTGCGTGGTCCTAATATGATGCAAGGTTATCACAACAATCCACAGGCCACTAGATTGACTATAGATAAACAGGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGACAACTTTTTGTTGTTGACCGTATCAAAGAACTTATCAAGTATAAAGGGTTCCAGGTTGCGCCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATCCTGAAATACTTGACGCTGTTGTTATCCCATACCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGTTCACCCAATAGTTCACTAACCGAGGAAGATGTTCAAAAGTTCATTGCTAATCAGGTAGCACCCTTCAAAAAATTGAGAAGGGTGACATTCATCAACACTGTTCCTAAGACAGCATCAGGAAAAATTCTTCGAAGAGAGCTCATTGACAAAGCACGATCCAAAATATAA 1626 0.4963 MQRSGYGSDGIYRSLRPSLVTPKNPNLSLVSHLFTKVSSFPTKPALIDADSNQTLSFSELKTLTVKLSHALLHHFNLAKNDVVLFLAPNSFLYPVCFLAVTSLGAVVSTVNPTYTLPEVSKQANDSAPKLVITVAELWDKVKHLNIPAVFLEPTTVPDSSVINIDELIGLELAGSVTDFPARDIKQGDTAALLYSSGTTGVSKGVILTHGNFIAASLMIGLDDELAGQMHDVFLCVLPMFHVFGFAVITYSQLMRGNAVVSLKRFEFELVLKTVEKYKVTHLWVVPPIVLALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPNVIVCQGYGMTETCGIVSVENPRMGVRHTGSTGMLVAGVEAQIVSVDTMKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKQGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIANQVAPFKKLRRVTFINTVPKTASGKILRRELIDKARSKI* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3674 541 CDD 4CL 22 533 - -
Lja3g3674 541 Gene3D - 439 540 IPR045851 -
Lja3g3674 541 Gene3D - 10 438 IPR042099 -
Lja3g3674 541 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 540 - -
Lja3g3674 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 540 - -
Lja3g3674 541 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Lja3g3674 541 Pfam AMP-binding enzyme 36 443 IPR000873 -
Lja3g3674 541 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Lja3g3674 541 SUPERFAMILY Acetyl-CoA synthetase-like 24 538 - -
Lja3g3674 541 ProSitePatterns EF-hand calcium-binding domain. 48 60 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3674 Lja-Chr3 72902992 72913506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3674 1 541 Monolignol Biosynthesis Gene Families AT4G05160 66.545 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3674 K01904 - gmx:100797843 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3674 3 72902992 72913506 Lja3g3674 3 72902992 72913506 ECH
Lja3g3674 3 72902992 72913506 Lja3g0890 3 9069262 9073545 PCT