Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3664 ATGGATGCTCCCCAGGACACACTTGGGTACATCAATAACGATTTTGAGCTGCATGACTTCATTGACGATCCAAACTTCGATCAGTTTATCAATTTGATTCGAGGGGAGAATGAAGATGCCATATGCAACTTCGGTTCTGATTTTATCAACGATTGTTTCATTGATAATAATCAGCTTCTTCCAAATCATGATGGAATCCCGTTTGGTCCGAGCAATAATAGTAATTTTGTGAATGTCTATGATCCAATAAGCTTCTCTTGTTTTGATGGGGTGGTGAAGGGAGAAGGAGAAGAGAATGATGGAGGAGATTCTTCCACTACGACAACCACCACCACCAATTCTGGGAGTGGGAGTGCTGATGATGATGCCCAACCGAAGGCGAAAAGCGATAGGTCCAAGACTCTCATTTGTGAGAGGAGAAGGAGAGGTAGAATGAAGGAGAAGCTTTATGCTTTGCGTTCTTTGGTTCCAAACATAACTAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTTTCATACGTGCATGACCTTCAAGCACAAGCAAAGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAATTACCAAGGATCAATTAACAACCGCATTAAGAATGTTCAAGTCACCAACAACAACAATCCAATCAGCAAGAAAATCATGCAGGTGGACATGTTTCAAGTGGAGGAGAGAGGGTATTATGTGAAAATAGTGTGCAATAAAGGAGCAGGGGTGGCTGTTTCTCTGTACAGAGCTATTGAGTCTCTTGCAGGATTCAATGTTCGCAATACAAACTTAGCCACAGTTTGTGACAGTTTTGTGCTTACATTTACAATGAATGTGAAAGGTTCTGAGCCAGAAATTAACCTTCCTAATTTGAAGCTGTGGGTGACCGGAGCTCTTCTGAACCAAGGCTTTGAATTCATGGCATCCTTTGATGTTTGA 963 0.4185 MDAPQDTLGYINNDFELHDFIDDPNFDQFINLIRGENEDAICNFGSDFINDCFIDNNQLLPNHDGIPFGPSNNSNFVNVYDPISFSCFDGVVKGEGEENDGGDSSTTTTTTTNSGSGSADDDAQPKAKSDRSKTLICERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQAKKLKAEVAGLEASLLVSENYQGSINNRIKNVQVTNNNNPISKKIMQVDMFQVEERGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMNVKGSEPEINLPNLKLWVTGALLNQGFEFMASFDV* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3664 320 MobiDBLite consensus disorder prediction 101 120 - -
Lja3g3664 320 Pfam Helix-loop-helix DNA-binding domain 136 179 IPR011598 GO:0046983
Lja3g3664 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 11 316 - -
Lja3g3664 320 MobiDBLite consensus disorder prediction 96 133 - -
Lja3g3664 320 CDD bHLH_AtFIT_like 128 203 - -
Lja3g3664 320 Gene3D - 119 195 IPR036638 GO:0046983
Lja3g3664 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 194 IPR036638 GO:0046983
Lja3g3664 320 Coils Coil 175 195 - -
Lja3g3664 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Lja3g3664 320 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 316 - -
Lja3g3664 320 SMART finulus 135 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3664 Lja-Chr3 72744064 72745975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3664 13 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.016 3.14e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g3664 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3664 - - gmx:100805451 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3664 3 72744064 72745975 Lja3g3664 3 72744064 72745975 ECH
Lja3g3664 3 72744064 72745975 Lja3g0909 3 9260349 9262692 PCT