Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3662 ATGATGTTGTCTAAAATGGACATCAATGAAGGCATAAGCAAAAGCATAGAGGAGTTACATGTTACCACCGCGAAGGGGAAGCGCACGAAGCGGCTGAGGCCGTGGTCCCCTTGCGCGGTCGCCGGGGCCGCCGCCGTGACTTCTAGCAGCTCAAGTGGCGCCGCCGACTCGTCCTCCACGATTGAAGGCGCTGATCAAGAAGAAGAAGATATGGCTAACTGCTTGATTCTGCTAGCCCAAGGAAGAGGAGAAGAAAGAGTCATCATCCCTCACCATAATAAGCAGAAGGAAGGTGAGATGGAGAATCATGTTGGTGATGATAACAAGAGTATGATGATGATGACAGAGAAAACCACCAAAATTGGTTTCTACGTTTATGAGTGCAAAACATGCAACCGAACATTCCCTTCGTTTCAAGCGCTGGGTGGGCACAGAGCCAGTCACAAGAAGCCTAAAGCGACGGTGACACAAGAGGAAAAGAAATCGCCACCACCACCACCAGCACCGCGGCTAACCACGAGCACTAGTACTCGTGATTTTGAGGAAACAAGGCAAACTCATGTCCCACATCGAGTTTCACTTGAATTGGGTGTCAATTTACATACCAATAAATCCACCAATTCCAAGTCAAAGATTCACGAGTGTTCCATTTGCGGGGCGGAATTCACATCCGGCCAAGCATTGGGTGGCCACATGAGGAGGCACAGGGCGGTGCAGGCGGCGGCGACGGTGGCGGCGTCTACCGGCAACAACAGCGCTGCCGTTCAGATTAAGCCACGGATTGTTCTGGAATTGGATCTCAACCTTCCGGCGCCGGAAGACGATCTCCGGGACTCGGCGTTTCAGATTCCGGCGACGGCGACGCAGAAGTCCATGGTGCTCTCGGCTGCTCCGGCTTTGGTGGGTTGCCATTATTCGGCCAGGGTGGGAATTGGATTTTAA 942 0.5255 MMLSKMDINEGISKSIEELHVTTAKGKRTKRLRPWSPCAVAGAAAVTSSSSSGAADSSSTIEGADQEEEDMANCLILLAQGRGEERVIIPHHNKQKEGEMENHVGDDNKSMMMMTEKTTKIGFYVYECKTCNRTFPSFQALGGHRASHKKPKATVTQEEKKSPPPPPAPRLTTSTSTRDFEETRQTHVPHRVSLELGVNLHTNKSTNSKSKIHECSICGAEFTSGQALGGHMRRHRAVQAAATVAASTGNNSAAVQIKPRIVLELDLNLPAPEDDLRDSAFQIPATATQKSMVLSAAPALVGCHYSARVGIGF* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3662 313 SUPERFAMILY beta-beta-alpha zinc fingers 125 235 IPR036236 -
Lja3g3662 313 MobiDBLite consensus disorder prediction 47 67 - -
Lja3g3662 313 Gene3D Classic Zinc Finger 193 258 - -
Lja3g3662 313 Gene3D Classic Zinc Finger 102 166 - -
Lja3g3662 313 ProSitePatterns Zinc finger C2H2 type domain signature. 128 148 IPR013087 -
Lja3g3662 313 SMART c2h2final6 126 148 IPR013087 -
Lja3g3662 313 SMART c2h2final6 213 235 IPR013087 -
Lja3g3662 313 MobiDBLite consensus disorder prediction 142 187 - -
Lja3g3662 313 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 305 - -
Lja3g3662 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 126 153 IPR013087 -
Lja3g3662 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Lja3g3662 313 MobiDBLite consensus disorder prediction 47 61 - -
Lja3g3662 313 PANTHER ZINC FINGER PROTEIN ZAT5 2 305 - -
Lja3g3662 313 Pfam C2H2-type zinc finger 125 151 - -
Lja3g3662 313 Pfam C2H2-type zinc finger 213 237 - -
Lja3g3662 313 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3662 Lja-Chr3 72717791 72718988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3662 25 305 C2H2 Transcription Factor Family AT2G28200 44.013 6.75e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3662 zf-C2H2_6 1.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3662 - - aprc:113855228 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3662 3 72717791 72718988 Lja3g3662 3 72717791 72718988 ECH
Lja3g3662 3 72717791 72718988 Lja5g1038 5 10534347 10535561 ECH
Lja3g3662 3 72717791 72718988 Lja1g0801 1 7753281 7754424 ECH
Lja3g0912 3 9302024 9303694 Lja3g3662 3 72717791 72718988 ECH
Lja1g0801 1 7753281 7754424 Lja3g3662 3 72717791 72718988 ECH
Lja3g3662 3 72717791 72718988 Lja3g0912 3 9302024 9303694 PCT