Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3661 ATGATTTCAAGGGCCACATCCAGCTTCCAAAGTGTCCATCAGGGGCTTCAAATGTTTCCTCCCACCCAAGATTTGGTTTCACCCTCTGTTGAAATGATCTCAGGCTCAGGCTCTTCACCCTCAACAAGCTCCCTCCTTTTCAACCTCTCTGTTCTCAAAGAAAAGCTGAATCAGGTGCAAACCCTGGTGGGTATCATTCTCTCCCCAAATCAAACCCTTCCAGAGTCAACTTCATTAGCCATCTCCAGCATGAACACCACAATTCAAGAAATCATAGTCACTGCCACCTCAATGATGTTCGCCTGCCAACACTTGGCTCTCACTACTGCTACTTGCACCACCAACAACCAATTGCACCACCATCAGCAATCTAATCATGATCACAACAAGGTACCTCCCTCAAATTTTGGCAATTACAGAGATGTCCTTAGTAACATAGGAACAGATATTAGATCAGGCCAGAGTTTATTTTCCAATACTGAGTCAGAGGCACTGGATAGCTGGTTTGGTGAAAGCTACAACAACAATAATAACAATAGTAATGTTAATGATGATGATAAAAGTGTTGCAATTAGTGAAAGCAATAATTGTAAGGAAGCAATAATGTCTCCAGGGGATGGACATGAACCTGTTGATACTGATGATAATGATATAATTGAATTGGATGTTGCTGATTTGTTGGCTAAGTACACGCATTATTGCCATGTTTGCGGGAAAGGGTTTAAGCGCGATGCAAATTTGAGGATGCACATGAGAGCTCATGGGGATGAGTACAAGACCAGTGCTGCATTGAGTAAACCAATTATCAAACACAAGGTGGGCAGTGAGAACTCTTTGATGAGTGTGAAGCCTAAAAAGTATTCATGTCCCCAATTAGGGTGCAGGTGGAACCAGAAGCATGCCAAGTTTCAAGCTTTGAAGTCCATGATTTGTGCTAAGAATCATTACAAGAGGAGCCACTGCCCCAAAATGTATGTTTGCAAGAGGTGCAATCAGAAGCAGTTCTCTGTGCTTTCAGATTTGAGGACACATGAGAAGCATTGTGGGGATCTCAAGTGGCAGTGTTCTTGTGGCACCACTTTTTCTAGGAAAGATAAGCTTATGGGCCATGTTGCTATGTTTGTGGGGCACCACCCAGCTGCTATGAATAGCTTTTCATGTTCAGGGAAAATAGAGAAGCAGGGATTGCAAATGCAGAATGATGGTAGTTCAAGATGA 1218 0.4294 MISRATSSFQSVHQGLQMFPPTQDLVSPSVEMISGSGSSPSTSSLLFNLSVLKEKLNQVQTLVGIILSPNQTLPESTSLAISSMNTTIQEIIVTATSMMFACQHLALTTATCTTNNQLHHHQQSNHDHNKVPPSNFGNYRDVLSNIGTDIRSGQSLFSNTESEALDSWFGESYNNNNNNSNVNDDDKSVAISESNNCKEAIMSPGDGHEPVDTDDNDIIELDVADLLAKYTHYCHVCGKGFKRDANLRMHMRAHGDEYKTSAALSKPIIKHKVGSENSLMSVKPKKYSCPQLGCRWNQKHAKFQALKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVAMFVGHHPAAMNSFSCSGKIEKQGLQMQNDGSSR* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3661 405 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 6 386 IPR044300 GO:0010044|GO:0010447
Lja3g3661 405 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Lja3g3661 405 Gene3D Classic Zinc Finger 323 374 - -
Lja3g3661 405 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Lja3g3661 405 SUPERFAMILY beta-beta-alpha zinc fingers 230 257 IPR036236 -
Lja3g3661 405 PANTHER OS08G0562300 PROTEIN 6 386 - -
Lja3g3661 405 Gene3D Classic Zinc Finger 227 290 - -
Lja3g3661 405 SMART c2h2final6 287 320 IPR013087 -
Lja3g3661 405 SMART c2h2final6 232 254 IPR013087 -
Lja3g3661 405 SMART c2h2final6 325 347 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3661 Lja-Chr3 72704807 72706039 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3661 44 380 C2H2 Transcription Factor Family AT5G22890 46.857 9.57e-101 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3661 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3661 - - gmx:100802769 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3661 3 72704807 72706039 Lja3g3661 3 72704807 72706039 ECH