Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3658 ATGGCGAAAGGTAAGGATTCTGATGAGTTTGTGTTGCTTTCGAAGATCCGTACGGGGGTGAAGAGGGAGTTTGCATTCGCCATGAAGGCTCAATCGGAGATTGGTGCTGGTTCTTTGGGTCGGACAAGGGGTAGCAAGAATCGGAATGAGGCGCCGGCGAGGACTGTTAGGGCTGCTAAGAGGTCAAGGAAGAATGCGGTGAAGGACGCGGCTGCGGAGGAGGTGGTGGTGGGTGATGCCATGAGCGAGGAGGAGGCTAAGAGTGATGTGGTGGACCTTCCCAGCGATGAGGTGGAGGAAGAGGAGCTGAAGGGTGATGTGGTGGTGGAAACTGTGATCAATGAGGAGGTTATGGAGGAAATAGCACCAGAATCCGTTGTGGTCAAAGTGGATTTTGAAGAATCGGAAAAGGGTGGTGTTGATGACCAACCCCTTGTTGTCAAAGAGGAGAAAGGTGCTCTTGATGAAAAACCCCTTGTGGTCAAAGAGGATTTGCAAGATCAGGGGAAGGGTGCTCTTGATGAACAACAACCCCTTGTGGTCAAAGAGGAGAAGGGTGCTCTTGATGAAAAAGGGGCTAGTGGGGTAGCCCCAGAGGCTTTGGTTAAGGATGATAAGGGTGATGTTAAGGGGGGGAAGAAGAAAAAGAAGAAGATGGCTTTGGATAATACAATGAGGAGGTTTACCAGGTCAGCATTGAAGCAAAATTCTGATGAAATGAAGATGGAAATTGGTGGGGAACAGGCTAATGCTGCAGGTGTTGGAATAGATGATAATGTTAAAAAGGAGGTTCAGGCCTCCCCATTAATGACCACTCCAATGCCATTTACAGGGTCCAGATTGAGGAAGTTCCCTACCAGGCTGAAGGATCTTCTGGCTACAGGGATTCTAGAGGGACTGCCCGTGAAGTATATTAAGGGAGTAAAGGCCCGAAGACCTGGAGAAAACGGGCTGCGAGGAGTGGTTACTGGGCCTGGGATTTTGTGCTATTGTGATAGTTGTAATGGGACTGAGGTTGTCTCGCCCACTGTGTATGAACTGCATGCTGGTAGTGCCAACAAACGTCCCCCAGAGTATACTTACCTTGATAATGGGCGTCCCCTCCGGGATGTCATGAATGCATGTTCGAATGGTCCATTGGGAAGCATGGAAGAAGTTGTTCAAATGATTCTTGGTCAATTTACTTTGAAGAAATCTAACATCTGTTTCAACTGCAGAGTGTCCACTTCTGATGATGGAGCGAGTCTGTCAAAACTATTTTGTGATTCATGCATGGAGTTAAAAGACTCTCAACATAGCCTCCCTGAAACAGCTGTGGCAAGTAGCTGCACCCTGGAAACAGCTGCGGAAAACAGCTGTGCCCCTGAAACAGCAGTGGCAAGCAGCTTCCCCCCTCCAACTGATGTGGCAAGCAGCTGCCCCCCTCAAACACCTGTGGCAAGCAGTGAAAGTATTTCACCAGATGTTCAGCCCAGATCACCCGAAACAGCTGTGCTTACGAAGTCATTAAAGGCTGGGATGAAACACAGTACATCCCGGGGCAAGAGTCAGGGAAAACTGACAAGAAAGGATTTACGCTTGCACAAGTTTGTATTTGAAGAAGATGTGTTGGCTGAGGGAGTTGAGTTAGCCTACTATGCTCATGGAAAGAAATTATTGGTTGGCTATAAAAAGGGATGTGGAATTTTGTGTACCTGCTGCAATGCTGAGGTCAGTGCTTCTCTGTTTGAATCTCATGCTGGCTGGGCAACCCGACGCAAGCCTTACCACAACATATATACAACTGACGGAGTCTCACTCCACGACTTGTCCATCTCTTTGTCGAGAGATCGGAGGTTTGCTACCACTGAAAATGATGACCTTTGCAGCATATGTGAAGATGGAGGGGATCTGTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTTTGTCATGCATTCCAAGTGGTACTTGGTATTGTAAATATTGCCAGAACCTTTTTGAGAAAGACAAACCAAGGGAGCGTAATAATAAACCAAAGACAAACCGAAGATGCGTTCGCGTTGTCAGAACTGTAGCGGTTGAACACGGCGGATGTGCCTTGTGCGGGAGTCATGATTTCAGTAAAATCTTTGGTCCTCGGACTGTAATTATTTGTGATCAGTGTGAAAGGGAATATCATGTTGGGTGTTTGAAGCAACATAACATGCAGGATCTAGCGGAACTGCCTGAAGGGAATTGGTTCTGCAGAGAAAGTTGCAATCAAATTCATTCAGCTTTGATTAATTTGGTTGCTTGTGGGGAGAAGAATATCCCAGATTCTTTTCAGAGCTTGATAAAAAAGAAGCATGAAGAGAAAGGTTTAGACACTGGGGTTGATCTTGATATCAAATGGAGGGTTCTGAATTGGAAATTGGCTCCTGGTGAGGAAACTAGGCCATTGCTTTCGAAGGCTGTTGCCATCTTTCATGAGAGGTTTGATCCTATTGTTGATTCTTCTTCTGGTCGTGATTTCATTCCAACAATGCTGTATGGAAGGAACATCCGGGGCCAAGATTTTGGTGGAATGTATTGTGCCGTGCTCACTGTCAACCAAGTTGTCGTCTCTGCTGGAGTATTTCGAGTCTTTGGACCGGAAATAGCTGAGCTTCCATTGGTGGCTACGACTGCTGAGTACCAAGGACAGGGTTATTTTCAGTGCTTATTTTCCTGCATTGAGGGGTTGCTTGGTTCTTTAAACGTGAAAAACCTTGTCCTGCCAGCGGCTGAGGAAGCTGAATCAATATGGACGGGTAAATTTGGGTTTACCAAGCTTGGGCAAGATGAGATAAAAAACTACAAGAAGTTTTATCATATGATGGTATTTCAAGGGACCTCGCTGCTTCAGAAGCCAGCTTCTGCACTCTGA 2901 0.4657 MAKGKDSDEFVLLSKIRTGVKREFAFAMKAQSEIGAGSLGRTRGSKNRNEAPARTVRAAKRSRKNAVKDAAAEEVVVGDAMSEEEAKSDVVDLPSDEVEEEELKGDVVVETVINEEVMEEIAPESVVVKVDFEESEKGGVDDQPLVVKEEKGALDEKPLVVKEDLQDQGKGALDEQQPLVVKEEKGALDEKGASGVAPEALVKDDKGDVKGGKKKKKKMALDNTMRRFTRSALKQNSDEMKMEIGGEQANAAGVGIDDNVKKEVQASPLMTTPMPFTGSRLRKFPTRLKDLLATGILEGLPVKYIKGVKARRPGENGLRGVVTGPGILCYCDSCNGTEVVSPTVYELHAGSANKRPPEYTYLDNGRPLRDVMNACSNGPLGSMEEVVQMILGQFTLKKSNICFNCRVSTSDDGASLSKLFCDSCMELKDSQHSLPETAVASSCTLETAAENSCAPETAVASSFPPPTDVASSCPPQTPVASSESISPDVQPRSPETAVLTKSLKAGMKHSTSRGKSQGKLTRKDLRLHKFVFEEDVLAEGVELAYYAHGKKLLVGYKKGCGILCTCCNAEVSASLFESHAGWATRRKPYHNIYTTDGVSLHDLSISLSRDRRFATTENDDLCSICEDGGDLLCCDGCPRAFHIDCVPLSCIPSGTWYCKYCQNLFEKDKPRERNNKPKTNRRCVRVVRTVAVEHGGCALCGSHDFSKIFGPRTVIICDQCEREYHVGCLKQHNMQDLAELPEGNWFCRESCNQIHSALINLVACGEKNIPDSFQSLIKKKHEEKGLDTGVDLDIKWRVLNWKLAPGEETRPLLSKAVAIFHERFDPIVDSSSGRDFIPTMLYGRNIRGQDFGGMYCAVLTVNQVVVSAGVFRVFGPEIAELPLVATTAEYQGQGYFQCLFSCIEGLLGSLNVKNLVLPAAEEAESIWTGKFGFTKLGQDEIKNYKKFYHMMVFQGTSLLQKPASAL* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3658 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 691 754 IPR013083 -
Lja3g3658 966 MobiDBLite consensus disorder prediction 47 65 - -
Lja3g3658 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 684 IPR013083 -
Lja3g3658 966 ProSiteProfiles Zinc finger PHD-type profile. 619 664 IPR019787 -
Lja3g3658 966 MobiDBLite consensus disorder prediction 457 497 - -
Lja3g3658 966 SUPERFAMILY FYVE/PHD zinc finger 615 666 IPR011011 -
Lja3g3658 966 CDD PHD1_AIRE 621 661 - -
Lja3g3658 966 SUPERFAMILY FYVE/PHD zinc finger 693 749 IPR011011 -
Lja3g3658 966 MobiDBLite consensus disorder prediction 36 65 - -
Lja3g3658 966 PANTHER AUTOIMMUNE REGULATOR 1 962 - -
Lja3g3658 966 SMART PHD_3 621 662 IPR001965 -
Lja3g3658 966 SMART PHD_3 696 751 IPR001965 -
Lja3g3658 966 MobiDBLite consensus disorder prediction 473 497 - -
Lja3g3658 966 ProSiteProfiles Zinc finger PHD-type profile. 694 753 IPR019787 -
Lja3g3658 966 PANTHER AUTOIMMUNE REGULATOR 1 962 - -
Lja3g3658 966 Pfam Tify domain binding domain 320 375 IPR032308 -
Lja3g3658 966 Pfam Tify domain binding domain 555 603 IPR032308 -
Lja3g3658 966 ProSitePatterns Zinc finger PHD-type signature. 622 661 IPR019786 -
Lja3g3658 966 Gene3D - 793 961 - -
Lja3g3658 966 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 852 939 IPR016181 -
Lja3g3658 966 MobiDBLite consensus disorder prediction 79 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3658 Lja-Chr3 72663890 72670709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3658 281 965 PHD Transcription Factor Family AT2G36720 43.785 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3658 - - gmx:100804381 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3658 3 72663890 72670709 Lja3g3658 3 72663890 72670709 ECH
Lja3g3658 3 72663890 72670709 Lja3g0918 3 9345979 9350592 PCT