Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3657 ATGAGTAGCCAACAGCAAGGTGCTTCTTTGGGGGAAAATGGGGAAGAACAATTTGCTGAATCTGCTACCCAAGTTCATGTTCGTGATGGATTTGTTCTCAATCAGAACGAAGGTCAAACTGAGCAATCACGGAGAGGAATTCGTAGATTACGTGGTCGACAGGTTCTGCTTGATATGCTTAAAAAGGCTGAGATGGAAAGGCAAAGAGAAGTTCGGGAGTTGTTAGACCATCGAGCTGTATCTCATTTCCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATGGATCGGTTGATACTAACAGGTCCACTTCCTTTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAACAGACTGTTTCAGGTCTAAGGGAAGGGTTCTTTTTTAAAAAGGACAATTTTGGTTGCAGTGAAGCAACCAGCAACCAATCTGATACCTCATCTGACGATGCTGTTGATGTTAATACAATTGAGCAAACTGAAGCTTCCACTTCACAAGTGGTCCCCACTATACATTCTGAACAATCAGAGCCTAATAACAGGGGAAGTGATAGATTTGGGATATCAGGTGGTCAAATTTGTTCACAAGAAACCACCTGTGAATATTTAGATGGGCAAAACACTACTACTCATGTAGAAACAAAAGAGTGGGAATCGTCTTCCTGTACCAGGTTTGAACTTAGAGATGAGACTAGACAAAATGTTGGTATGATGTCAACTGAAGATACTGTTAATGACCTTACCGAGAATAGCTTGCAAATTGCAGTTATGGATCATAGCGATATGCTGGAACTAATTGAGGTGCATACAGAGCAATCTCAGCTGGGTGATATAGCTGGTGATGAAAGCAATCTATCAAATCACAACAATCTTGTAGAGGGAAATATTGTTGATGATGCAGATTTAATCGAATCTGTTGCGACGGAAAGAGAGCAACAAGAAGTTATTGGTGAAATTGAAGAAAGTGACTTGCATCAAACTAACGTTGAATGGAGAGATAGCACCCAGGAAAGTGTGGATGATAACCATCATAGTAGCACATCAAATGAATGGCCCCAGAACATCCTGGAAAATGAAGATGGAGAAAATTCTCGTTTGCAAGAGCAAGAAGCCTCTGAAGTGTGGCAAGAAGATGGTGACTTTCAAGAGGCGGTGGAAATTTGGTTGGGTGGACCTTCTGATAATGAAGTAGCTCCCGTTGGTAGAATTCACGGATTTTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAGCTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTACGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCATATGTTGAAAGGCAAGGTCATGCTCATGTCGAATGGGAGCTGCAAGAAACATCACCTTCTTCTCCATTGGCAGAACGAAACATGGAGCAGCGGAGTAGGGATAGTCTCGTTGGTTCAGAGGCTCCTGTTAATACTCCACTTGATCTGCCCTTGCCACCAACACCTCCTCCTCAGCCTTTGTGGGATCGGCAATCACGTCATGATACCTGGTCACAGAGTGACATGAATAGTCAGCGCCTGGGAATTGTGCGTTCACTTGCAGGACATAACTGCTTTTCTTTAGTTGATGAATGGGATACTATTAATGACTTGAGGATTGACATGGTTAGGCTACATCAAAGGATGAATAATATGCAGAGAATGATGGAGACTTGTATGGATATGCAGATTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTCAATCGCTCAACTGGTTCATCAGGAAGCCCCCATGATTCATCATCGGAAGATAAATCTAAATGGGAGTGTGTCAGGAAAGGGCTTTGCTGTATATGCTGCGAAAGTAATATTGATTCATTGTTGTATAGATGTGGACACATGTGCACATGTTCAAAATGTGCCAGTGATTTGCTCCAAAGTAAAAGAAAGTGTCCAATGTGTCAAGCACCTGTGGTGGAAGTTATACGTGCTTATTCTATACAATAG 2034 0.4248 MSSQQQGASLGENGEEQFAESATQVHVRDGFVLNQNEGQTEQSRRGIRRLRGRQVLLDMLKKAEMERQREVRELLDHRAVSHFPHRNRIQALLRGRFLRNDGSVDTNRSTSFAESELGLLRQKQTVSGLREGFFFKKDNFGCSEATSNQSDTSSDDAVDVNTIEQTEASTSQVVPTIHSEQSEPNNRGSDRFGISGGQICSQETTCEYLDGQNTTTHVETKEWESSSCTRFELRDETRQNVGMMSTEDTVNDLTENSLQIAVMDHSDMLELIEVHTEQSQLGDIAGDESNLSNHNNLVEGNIVDDADLIESVATEREQQEVIGEIEESDLHQTNVEWRDSTQESVDDNHHSSTSNEWPQNILENEDGENSRLQEQEASEVWQEDGDFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETSPSSPLAERNMEQRSRDSLVGSEAPVNTPLDLPLPPTPPPQPLWDRQSRHDTWSQSDMNSQRLGIVRSLAGHNCFSLVDEWDTINDLRIDMVRLHQRMNNMQRMMETCMDMQIELQRSIRQEVSAALNRSTGSSGSPHDSSSEDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCASDLLQSKRKCPMCQAPVVEVIRAYSIQ* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3657 677 MobiDBLite consensus disorder prediction 467 508 - -
Lja3g3657 677 MobiDBLite consensus disorder prediction 339 361 - -
Lja3g3657 677 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g3657 677 MobiDBLite consensus disorder prediction 315 334 - -
Lja3g3657 677 PANTHER PROTEIN, PUTATIVE-RELATED 1 677 - -
Lja3g3657 677 Coils Coil 553 573 - -
Lja3g3657 677 MobiDBLite consensus disorder prediction 166 189 - -
Lja3g3657 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 602 675 IPR013083 -
Lja3g3657 677 CDD mRING-HC-C3HC5_NEU1 625 663 - -
Lja3g3657 677 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 677 - -
Lja3g3657 677 Pfam Zinc finger, C3HC4 type (RING finger) 622 669 - -
Lja3g3657 677 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g3657 677 SUPERFAMILY RING/U-box 624 670 - -
Lja3g3657 677 ProSiteProfiles Zinc finger RING-type profile. 625 664 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3657 Lja-Chr3 72629236 72635661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3657 581 671 C3H Transcription Factor Family AT3G06140 31.868 4.68e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3657 - - gmx:100804887 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3657 3 72629236 72635661 Lja3g3657 3 72629236 72635661 ECH
Lja3g0919 3 9367968 9373203 Lja3g3657 3 72629236 72635661 ECH
Lja3g3657 3 72629236 72635661 Lja3g0919 3 9367968 9373203 PCT