Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3643 ATGGCGGAAGACCGCAACCGCAATGAGGCGAGTGACTACAGTTCGGAGGACGAAGGCACCGAGGATTACAGGCGTGGAGGGTACCATGCGGTTCGGATTGGGGACGCTTTCAAGAATGGGTGCTACGTGATCCAGAGCAAGCTCGGTTGGGGTCATTTTTCCACTGTCTGGCTCGCTTGGGATACTCAGAAATCGCGATATGTTGCTTTGAAAATTCAGAAAAGTGCTCAGCACTACACTGAAGCAGCGATGGATGAAATAAAGATTCTTAAACAACTTGCTGAGGGGGATCTAGATGATAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTCCTCACACTTATAAAGTATAGTGATTATAGAGGGATTCCACTTCCAATGGTCAAAGAAATTTGTTTCCATGTTTTGGTGGGTTTGGACTACCTGCATCGTGAGCTTTCTGTGATACACACCGACTTGAAGCCAGAGAATGTCTTGCTTCTGTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTGTCCTTCCAAACACCAAGGACAAGACCTTGTCCAGGAATGGGACCATAAAAGATGAAAAAAGTTTGAATGGAGATCTGACCAAAAACCAGAAAAAGAAAATGCGGAAAAAAAAGGCTAAAAAAGTAGCTCAGGGTGGTGTTGTGAAGGAAAATTCTGAGGAAGCAGAGGAGGACTCTAAAGCACCTCAGCAAGATGATTGTAGTATTGATTCGAAAGTAAGTCTAGAATCTAGTGAAAATAAACCTAATAGTCCAGTGAGTAAAGATGAATCAAAAAAGACTTGTGAAACTAAGGATGTTCCACAAGGAAGTCAGGGTCATAGGAGAGCTAGCCGCTCTACCAGAAAGAAGTTGCTTGCAGATGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGCTGGACATATAAACAATTCACTAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTCTTCTTGGATCTAAGTACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGTGATGTTCTTTTTGATCCTCATAGCGGTGACAACTATGAGAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCGCGCAAGATTGCACTTAGCGGCCGCTATTCCCGGGACTTTTTCAATAGATATGGTGATTTGAGGCACATTCGTCGGTTGCGTTTCTGGCCTCTTAATAAAGTGCTGATGGAGAAGTATGAATTCAGTGAGCAAGATGCAAAAGACATGGCTGACTTCCTTCTTCCACTACTTGATTTTGTCCCTGAGAAGAGACCAACAGCTGCTCAATGCCTCAGTCATCCATGGATGAGTGCAGGTCCTCGAACTCTTGAGCCCTCATTGCCTAATATACACCCTGATGCTATTGACAAGGAAATGTCTGAAAAGGTGAAGAGGGAAAAGGCTGAGCATGAGGCTGTGGAAGTTGGTATGGGGAACATAGTCATTGATGGAACCCCAAAGGCATCAGAATAG 1617 0.4372 MAEDRNRNEASDYSSEDEGTEDYRRGGYHAVRIGDAFKNGCYVIQSKLGWGHFSTVWLAWDTQKSRYVALKIQKSAQHYTEAAMDEIKILKQLAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPLPMVKEICFHVLVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLVLPNTKDKTLSRNGTIKDEKSLNGDLTKNQKKKMRKKKAKKVAQGGVVKENSEEAEEDSKAPQQDDCSIDSKVSLESSENKPNSPVSKDESKKTCETKDVPQGSQGHRRASRSTRKKLLADVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYERDEDHLALMMELLGMMPRKIALSGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYEFSEQDAKDMADFLLPLLDFVPEKRPTAAQCLSHPWMSAGPRTLEPSLPNIHPDAIDKEMSEKVKREKAEHEAVEVGMGNIVIDGTPKASE* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3643 538 MobiDBLite consensus disorder prediction 182 312 - -
Lja3g3643 538 CDD STKc_SRPK 31 484 - -
Lja3g3643 538 SMART serkin_6 42 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3643 538 SUPERFAMILY Protein kinase-like (PK-like) 38 496 IPR011009 -
Lja3g3643 538 ProSiteProfiles Protein kinase domain profile. 42 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3643 538 MobiDBLite consensus disorder prediction 281 303 - -
Lja3g3643 538 Gene3D Transferase(Phosphotransferase) domain 1 125 485 - -
Lja3g3643 538 Pfam Protein kinase domain 317 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3643 538 Pfam Protein kinase domain 42 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3643 538 MobiDBLite consensus disorder prediction 1 21 - -
Lja3g3643 538 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 536 - -
Lja3g3643 538 Gene3D Phosphorylase Kinase; domain 1 18 124 - -
Lja3g3643 538 MobiDBLite consensus disorder prediction 209 227 - -
Lja3g3643 538 MobiDBLite consensus disorder prediction 248 263 - -
Lja3g3643 538 PANTHER SERINE KINASE-LIKE PROTEIN 9 536 - -
Lja3g3643 538 MobiDBLite consensus disorder prediction 264 280 - -
Lja3g3643 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Lja3g3643 538 ProSitePatterns Protein kinases ATP-binding region signature. 48 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3643 Lja-Chr3 72222272 72226643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3643 1 537 EF-hand Containing Proteins AT5G22840 68.431 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lja3g3643 Pkinase 2.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3643 K08832 - gmx:100791829 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3643 3 72222272 72226643 Lja3g3643 3 72222272 72226643 ECH