LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3632	ATGGGGAGCAAAGTCTCCGACCACCACCTATCCACCGTCCGATCCATCGTCGGTCCCGAATTCACCGACATGGAAATCATCAGAGCCCTACACATGGCCAAAAACGACGTCACCGCCGCCATCAACATCATCTTCGACACCCAAACCCACACCCCCAAATCCAAACCCACCCGCTCCACCGCCACCAAACCGCGACGAGTTTCTCCTCCTAAATCAACCCCTAACGCTGTCGCCGCCATCACCGACATCGACGGAGGAGCTAGCAGTAGCTGCCCTGTTGGGCCCGACGATTGGTGGTTTGTGGGTTGCGGTGAAGTGGCAGGGTTGTCGACTTGTAAAGGGAGAACTGTGAAATCAGGTGATGCAGTGGTTTTCAGGTTTCCCAACAAGAAGCCCTCTGCTTCGCCCTCTACGGCTAAAGGGTTCGGACGTGCCGCCGCAACTTGTACGGAGATTGTTCGATTTTCGACTGAGCCAGCTGGAGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTCTTGCCTCTTGTGCGGGATAATAAGGTTAAGGTTGAAGGGCTATGTAAATTTGCGCCTGATGTTTTGGGCATCATGGACACCATTGCTTTGTCGGTCAGTGTCTTCATCAATAGGTCAATGTTTGTTAAGCGTCACCAGGTTTCTCTCAAGGATGCTACCAGTTCCACAGATGAATCAGTGTTTCATCCTCTTCCAACCCTGTTTCGGTTGCTTGGCCTTAGCCCTTTTAAGAAGGCAGAGTTAACTCCTGGTGACTTCTGTACCAACAAGCGTCCTTTCAGCCAAAAGGAAATGGATCCCCCTAGAAATCTTCTATGTGAATTGCGGCCCTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGACGATCTGTAGATGAGACAGATACAACTCTTCATCCATGTTGGGATGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCTAGCACCCTTCAAATGGCCAAAGGAGGAATTTTGGCAGATGCTATGGGGCTCGGAAAGACCATCATGACCATATCCCTTCTTGTTGCCCATTCAGGAAGGGGTGGATCATTGGGCAGTCAAGCGATGACTCAGTCCTTCATTGAAGGTGGTGATGTTGGTGATACAGTGGACAATTTTTCACACATACCGAAGAAAGCAACCAAATTTACTGGTTTTGATAAAATCATAAAGCAAAAGAATGCTCTAACAAGTGGATGCAGCTTGATAATATGTCCCATGACTCTTCTCGGGCAGTGGAAGGTAGAGATTGAAACTCATGTCAGTCCTGGGTCTCTTTCTCTATATGTTCATTATGGACAAAGTAGGCCAAGAGATGCAAAAAGTCTGGCCCAAAGTGATGTTGTAATTACAACATATGGAGTTTTGGCTTCTGAATTTTCCAATGAGAATGCAGAGAATAGTGGTGGACTCTTCTCTATTCGGTGGTTTAGAGTGGTCCTTGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTGCTGCTCTAATTGCTGACAAACGTTGGTGTCTTACTGGGACTCCTATCCAGAACAACCTTGAGGATATTTACAGTCTTCTTCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAGACTTATTCAGAAACCTTTTGAGGGTGGTGATGAGAGAGGGTTGAAGTTAGATCAGTCCATTTTGAAGCCAATCATGTTGAGGAGAACCAAAAATAGCACAGACCGAGAGGGAAAGCCTATCCTAGTTCTTCCTCCAGCGGATATGCAGATAATTTACTGTGAACCCACAGACGCTGAAAAGGACTTTTATGAGGCCCTATTTAAAAGATCTAAGGTAAAGTTCGACCAGTTTGTTGAACAAGGGCGCGTTCTTCATAATTATGCTTCCATACTAGAGTTACTTTTACGCCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGCGTAAATTATTGTGGGCTTGTGGCTGTCAATGTCAAGCTTCGCGTGCCAGCTGTCCTAAATAAATTTCTTCAGCCTATAACAATATCTGCTGAGGAGTTTTTCCCTCAATGGAGATCCCTGCCTGGACCACCTTTGAAGCTTCAAGAAGTGGTTAGAGGTGTCAGACCACTTCCACTGCCCGAAATGGCAAACTTATTTAATAGTTATCATCTGACAGTGTGCCCAGGGCTTGACCCCAATCCAAACAATCTTGTTATTAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTCTGTTTGATAAGAATTGAAACAGATCCAGCGGACAGAACCCAGCTGCGAATGACGGTTGCTTCAGGGGACCCAGCATTAACGTTTGAGATGAAGGAGTTCGTCAAGGAACAACTAGTCATCATCCCCCCAACATCCCGTGTACCTGCAACACCAGCAGCTCCAACACCTCTAGTGGCTCAACTAGCTATTGCTCCCGCAACAACGAACGATCCTGGGGCCTTGCTTGCTGCTCTTCTATGA	2565	0.4639	MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQTHTPKSKPTRSTATKPRRVSPPKSTPNAVAAITDIDGGASSSCPVGPDDWWFVGCGEVAGLSTCKGRTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFSTEPAGEIGRIPNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFVKRHQVSLKDATSSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFCTNKRPFSQKEMDPPRNLLCELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGDVGDTVDNFSHIPKKATKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLDQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSVNYCGLVAVNVKLRVPAVLNKFLQPITISAEEFFPQWRSLPGPPLKLQEVVRGVRPLPLPEMANLFNSYHLTVCPGLDPNPNNLVISTTFYSESTRAMLCLIRIETDPADRTQLRMTVASGDPALTFEMKEFVKEQLVIIPPTSRVPATPAAPTPLVAQLAIAPATTNDPGALLAALL*	855

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3632	854	MobiDBLite	consensus disorder prediction	48	69	-	-
	Lja3g3632	854	Gene3D	-	611	692	IPR027417	-
	Lja3g3632	854	MobiDBLite	consensus disorder prediction	48	74	-	-
	Lja3g3632	854	CDD	DEXDc_SHPRH-like	282	595	-	-
	Lja3g3632	854	Pfam	Alpha adaptin AP2, C-terminal domain	698	805	IPR003164	GO:0006886\|GO:0016192\|GO:0030131
	Lja3g3632	854	Gene3D	-	341	606	IPR038718	-
	Lja3g3632	854	SMART	HIRAN_2	101	210	IPR014905	GO:0003676\|GO:0008270\|GO:0016818
	Lja3g3632	854	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	340	557	IPR014001	-
	Lja3g3632	854	Gene3D	-	699	813	IPR012295	-
	Lja3g3632	854	SMART	ultradead3	278	579	IPR014001	-
	Lja3g3632	854	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	267	595	IPR027417	-
	Lja3g3632	854	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	607	677	IPR027417	-
	Lja3g3632	854	Pfam	HIRAN domain	102	206	IPR014905	GO:0003676\|GO:0008270\|GO:0016818
	Lja3g3632	854	PANTHER	DNA REPAIR PROTEIN RAD5	91	676	-	-
	Lja3g3632	854	PANTHER	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	91	676	-	-
	Lja3g3632	854	Pfam	SNF2-related domain	285	673	IPR000330	GO:0005524\|GO:0140658
	Lja3g3632	854	SUPERFAMILY	Subdomain of clathrin and coatomer appendage domain	698	813	IPR009028	GO:0006886\|GO:0016192\|GO:0030117

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3632	Lja-Chr3	71955014	71965912	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g3632	1	676	RAD5 or RAD16-like Gene Family	AT5G22750	61.528	0.0	920

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SNF2	Lja3g3632		SNF2_N	4.7e-83	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3632	K15505		-	gmx:100794452	1108.59