Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3630 ATGGGGAGCAAAGTCTCCGACCACCACCTATCCACCGTCCGATCCATCGTCGGTCCCGAATTCACCGACATGGAAATCATCAGAGCCCTACACATGGCCAAAAACGACGTCACCGCCGCCATCAACATCATCTTCGACACCCAAACCCACACCCCCAAATCCAAACCCACCCGCTCCACCGCCACCAAACCGCGACGAGTTTCTCCTCCTAAATCAACCCCTAACGCTGTCGCCGCCATCACCGACATCGACGGAGGAGCTAGCAGTAGCTGCCCTGTTGGGCCCGACGATTGGTGGTTTGTGGGTTGCGGTGAAGTGGCAGGGTTGTCGACTTGTAAAGGGAGAACTGTGAAATCAGGTGATGCAGTGGTTTTCAGGTTTCCCAACAAGAAGCCCTCTGCTTCGCCCTCTACGGCTAAAGGGTTCGGACGTGCCGCCGCAACTTGTACGGAGATTGTTCGATTTTCGACTGAGCCAGCTGGAGAGATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTCTTGCCTCTTGTGCGGGATAATAAGGTTAAGGTTGAAGGGCTATGTAAATTTGCGCCTGATGTTTTGGGCATCATGGACACCATTGCTTTGTCGGTCAGTGTCTTCATCAATAGGTCAATGTTTGTTAAGCGTCACCAGGTTTCTCTCAAGGATGCTACCAGTTCCACAGATGAATCAGTGTTTCATCCTCTTCCAACCCTGTTTCGGTTGCTTGGCCTTAGCCCTTTTAAGAAGGCAGAGTTAACTCCTGGTGACTTCTGTACCAACAAGCGTCCTTTCAGCCAAAAGGTCACATTACCCCATGCCAAGACTGAGCGTCCTTCTCAAAATGGTGATGAGAATGAAAATGATGATTCCATTTCTGAAGTTGATCTTGAAAACATTGTTGGTGTCGGATCAGGCTCAGAGTTAGAGGAAATGGATCCCCCTGGAAATCTTCTATGTGAATTGCGGCCCTATCAAAAGCAGGCACTTTATTGGATGATCCAGATGGAGAAGGGACGATCTGTAGATGAGACAGATACAACTCTTCATCCATGTTGGGATGCATATCGCCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCTAGCACCCTTCAAATGGCCAAAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTTGTTGCCCATTCAGGAAGGGGTGGATCATTAGGCAGTCAAGCGATGACTCAGTCCTTCATTGAAGGTGGTGAGGTTAGTGATACAGTGGACAATTTTTCTCACATACCGAAGAAAGCATCCAAATTTACTGGTTTTGATAAAATCATAAAGCAAAAGAATGCTCTAACAAGTGGATGCAGCTTGATAATATGTCCCATGACTCTTCTCGGGCAGTGGAAGGTAGAGATTGAAACTCATGTCAGTCCTGGGTCTCTTTCTCTATATGTTCATTATGGACAAAGTAGGCCAAGAGATGCAAAAAGTCTGGCCCAAAGTGATGTTGTAATTACAACATATGGAGTTTTGGCTTCTGAATTTTCCAATGAGAATGCAGAGAATAGTGGTGGACTCTTCTCTATTCGGTGGTTTAGAGTGGTCCTTGATGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTGCTGCTCTAATTGCTGACAAACGTTGGTGTCTTACTGGGACTCCTATCCAGAACAACCTGGAGGATATTTACAGTCTTCTTCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAGACTAATTCAGAAACCTTTTGAGGGTGGCGATGAGAGAGGGTTGAAGTTAGTTCAGTCCATTTTGAAGCCAATCATGTTGAGGAGAACCAAAAATAGCACAGATCGAGAGGGAAAACCTATCCTAGTTCTTCCTCCAGCGGATATGCAGATAATTTACTGTGAACCCACAGACGCTGAAAAGGACTTTTATGAGGCCCTATTTAAAAGATCTAAGGTAAAGTTCGACCAGTTTGTTGAACAAGGGCGCGTTCTTCATAATTATGCTTCCATACTAGAGTTACTTTTACGCCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGGGGTGATACTCAAGAATTTACTGATCTAAACAAACTAGCTAGGCGCTTCCTTAAAGGAACCTCTAATGCTTCAGAAGGTGAAACCAAAAATGCGCCCTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAGGGAGAATGTCCAATATGTCTTGAATCATTTGAAGATTCAGTGTTAACGCCTTGTGCTCACCGTTTATGCCGGGAATGCCTCTTGGCAAGTTGGCGGAGTTCTACTTCTGGTTTATGTCCTGTTTGTAGGAAAATAATCAGCAAGCAGGATCTCATCACTGCCCCTACTGAGAGTCGGTTTCAGGTTGATATTGAGAAGAACTGGGTAGAGTCATGCAAGGTAACTGTTCTTTTGAATGAACTTAAAAGTCTCTGCTCATCAGGCTCCAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTTGACCTCTTGCAGACCCCCTTTACTCGGAACAACATTTCATTTGTTCGTCTTGATGGGACTTTGAATCAGCAGCAGCGGGAAAAAGTAATCAAAAAATTCTCAGAAGACAGCGACACCATGGTGTTATTGATGTCTCTAAAAGCTGGAGGAGTGGGTATAAACCTAACAGCTGCTTCCAATGCTTTTGTGATGGACCCATGGTGGAATCCGGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAGAGAAGGTGGCCATCAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAAGCAGTAAAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACCGATCAAGAAGTTCGAACTGCACGGATTGAGGAGTTGAAGATGCTTTTTACTTAA 3021 0.4548 MGSKVSDHHLSTVRSIVGPEFTDMEIIRALHMAKNDVTAAINIIFDTQTHTPKSKPTRSTATKPRRVSPPKSTPNAVAAITDIDGGASSSCPVGPDDWWFVGCGEVAGLSTCKGRTVKSGDAVVFRFPNKKPSASPSTAKGFGRAAATCTEIVRFSTEPAGEIGRIPNEWARCLLPLVRDNKVKVEGLCKFAPDVLGIMDTIALSVSVFINRSMFVKRHQVSLKDATSSTDESVFHPLPTLFRLLGLSPFKKAELTPGDFCTNKRPFSQKVTLPHAKTERPSQNGDENENDDSISEVDLENIVGVGSGSELEEMDPPGNLLCELRPYQKQALYWMIQMEKGRSVDETDTTLHPCWDAYRLADKRELVIYLNAFSGEATIEFPSTLQMAKGGILADAMGLGKTIMTISLLVAHSGRGGSLGSQAMTQSFIEGGEVSDTVDNFSHIPKKASKFTGFDKIIKQKNALTSGCSLIICPMTLLGQWKVEIETHVSPGSLSLYVHYGQSRPRDAKSLAQSDVVITTYGVLASEFSNENAENSGGLFSIRWFRVVLDEAHTIKSSKSQVSMAAAALIADKRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNRLIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQIIYCEPTDAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFTDLNKLARRFLKGTSNASEGETKNAPSRAYVQEVVEELRKGEQGECPICLESFEDSVLTPCAHRLCRECLLASWRSSTSGLCPVCRKIISKQDLITAPTESRFQVDIEKNWVESCKVTVLLNELKSLCSSGSKSIVFSQWTAFLDLLQTPFTRNNISFVRLDGTLNQQQREKVIKKFSEDSDTMVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTEKVAIKRFIVKGTVEERMEAVKARKQRMISGALTDQEVRTARIEELKMLFT* 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3630 1006 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 382 599 IPR014001 -
Lja3g3630 1006 Pfam HIRAN domain 102 206 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lja3g3630 1006 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 822 IPR013083 -
Lja3g3630 1006 Pfam SNF2-related domain 327 715 IPR000330 GO:0005524|GO:0140658
Lja3g3630 1006 Gene3D - 381 649 IPR038718 -
Lja3g3630 1006 SMART HIRAN_2 101 210 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lja3g3630 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 649 995 IPR027417 -
Lja3g3630 1006 Gene3D - 653 1006 IPR027417 -
Lja3g3630 1006 ProSitePatterns Zinc finger RING-type signature. 786 795 IPR017907 -
Lja3g3630 1006 ProSiteProfiles Zinc finger RING-type profile. 771 811 IPR001841 -
Lja3g3630 1006 Pfam Helicase conserved C-terminal domain 842 953 IPR001650 -
Lja3g3630 1006 SMART ring_2 771 810 IPR001841 -
Lja3g3630 1006 CDD DEXDc_SHPRH-like 324 637 - -
Lja3g3630 1006 SUPERFAMILY RING/U-box 759 817 - -
Lja3g3630 1006 CDD RING-HC 771 810 - -
Lja3g3630 1006 MobiDBLite consensus disorder prediction 271 296 - -
Lja3g3630 1006 PANTHER DNA REPAIR PROTEIN RAD5 91 1006 - -
Lja3g3630 1006 MobiDBLite consensus disorder prediction 48 69 - -
Lja3g3630 1006 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 841 1006 IPR001650 -
Lja3g3630 1006 MobiDBLite consensus disorder prediction 48 74 - -
Lja3g3630 1006 SMART ultradead3 320 621 IPR014001 -
Lja3g3630 1006 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 91 1006 - -
Lja3g3630 1006 CDD SF2_C_SNF 837 964 - -
Lja3g3630 1006 Pfam Zinc finger, C3HC4 type (RING finger) 768 816 - -
Lja3g3630 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 637 IPR027417 -
Lja3g3630 1006 SMART helicmild6 870 953 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3630 Lja-Chr3 71867843 71885023 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3630 1 1006 RAD5 or RAD16-like Gene Family AT5G22750 69.135 0.0 1467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g3630 SNF2_N 4.3e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3630 K15505 - gmx:100794452 1716.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3630 3 71867843 71885023 Lja3g3630 3 71867843 71885023 ECH