Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3628 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAAACTGTTAAGGTCGACCCAAGCGAGTTTGAGGCATGCATTCACCTTTCCCAGGCTGCTCTTGGTGAGTCAAAGAAGGACAAAGAACCTGTGGTCCTTTCCCTGAAAGTTGGTGACCAGAAATTTGTTCTGGGAACCCTTAACAGGGAGAAGATTCCTCAAGTGTCTCTTGAATTAGTTCTTGACAGGGAGTTTGAGCTTTCTCACAACTCTAAAACTGCTAGTGTTCATTTCTGTGGATACAAAGCATACTACCCTGCTGATGAAAGCGAGGATGATTTTTCTGATAGTGATGAGAGTGATGAGGATATCCCATTGAACGCTGAGAATGGGAAGCCTGTGATAAAAGCTGAGGAGTTAAAGGTAACTGGGTCTAAAAAGGCTGATGCCAAGAGTGGTGCCTCAGCAAAACAAGTCAAGGTTATTGACCCCAAGAAAGATGAAGAGGATGATTCTGATGATGAAGATGATGAAGATGATGATTCTGATGAGGAGATGGATGATGCTGATAGTGACAGTGATGAGAGCGACAGTGATGATACTGATGAAGAGACCCCTGTTAAGAAGGCTGATCAGGGAAAGAAGAGAGCTAATGACTCTGCATTAAAAACCCCAGTTTCTACCAAGAAGGCAAAAAACATCACGCCTGAAAAGACTGATGGTAAGAAAACAGGACATACTGCCACTCCTCACCCTGGGAAGAAAGGTGGAAAGAATTCTGAGTCTAAGGCTCAGACTCCCAAGTCGGGTGGACAGTTCTCTTGCTCTCCCTGTAGCAAGTCTTTCAATTCTGAGAGTGGTTTCCAACAACATAAAAAGGCTAAGCATGGTGGTCAGTGA 873 0.4456 MEFWGAEVKVGETVKVDPSEFEACIHLSQAALGESKKDKEPVVLSLKVGDQKFVLGTLNREKIPQVSLELVLDREFELSHNSKTASVHFCGYKAYYPADESEDDFSDSDESDEDIPLNAENGKPVIKAEELKVTGSKKADAKSGASAKQVKVIDPKKDEEDDSDDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKKADQGKKRANDSALKTPVSTKKAKNITPEKTDGKKTGHTATPHPGKKGGKNSESKAQTPKSGGQFSCSPCSKSFNSESGFQQHKKAKHGGQ* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3628 290 MobiDBLite consensus disorder prediction 250 279 - -
Lja3g3628 290 MobiDBLite consensus disorder prediction 101 115 - -
Lja3g3628 290 Gene3D Nucleoplasmin core domain 1 98 - -
Lja3g3628 290 SUPERFAMILY beta-beta-alpha zinc fingers 258 286 IPR036236 -
Lja3g3628 290 MobiDBLite consensus disorder prediction 193 209 - -
Lja3g3628 290 MobiDBLite consensus disorder prediction 101 290 - -
Lja3g3628 290 ProSitePatterns Zinc finger C2H2 type domain signature. 266 287 IPR013087 -
Lja3g3628 290 MobiDBLite consensus disorder prediction 159 192 - -
Lja3g3628 290 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 286 - -
Lja3g3628 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 290 IPR013087 -
Lja3g3628 290 Gene3D Classic Zinc Finger 250 288 - -
Lja3g3628 290 MobiDBLite consensus disorder prediction 224 238 - -
Lja3g3628 290 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Lja3g3628 290 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3628 Lja-Chr3 71834642 71837564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3628 1 287 C2H2 Transcription Factor Family AT5G03740 38.608 6.36e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3628 NPL 1.8e-14 CL0055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3628 3 71834642 71837564 Lja3g3628 3 71834642 71837564 ECH
Lja3g3628 3 71834642 71837564 Lja3g0944 3 9630149 9633841 PCT