Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3616 ATGAATGATTCTTCAGGAGATAATTGGCTTAATCCGTTTGATGACGAGCTTTATATCATCGATGAGGATGATAGTCTGAATTCTAGCCCTGCCAACGGTTTGAAGCAGGGTGTGAATGAAGGGGATAATGATGGGGAAAATTTTGTGGATGTCGATGAGATGTTTGAAACTGGAAATGACAGTCAAAAAAACTCTGATGTAGAAGTTAAAGTCATGAAAAGGATTACTGAATTGTCTGCAGACGACATTAGAGGGATGGATTTCTCTTCTGAGGAGGAAGCATGTGAATTCTATTCTAAATATGCTCGTATCCGTGGATTCTCTCCAAGAAAAGATAATGTATACAAGGATGATGATGGCAAGATTATCTCACGACAGGTGGTGTGCAATAGGGCTGGACAAAGGCATCAGAAGCATATGCATAATAGTGGCAGAAGAAAACAACCTAAGCCTATTACTAGACGGGCTATGAAGAAATACAGGCACAATGAGTTGGAATCTGATTTTAAGTCTTCTTATGGTGAGCCTGTTATGACAACTGCACTTAGTGGCATTGAGTATGGAGCTGCCAAAATATTAACAAGGAAAATGTTTTGGGAAGTCAAGGGTCAAATTGAAGATGCCCTGGGGCTAAATGTGGAGCGTTCTGAGGTGGCCAATATTGTGATGATGAAAATGAGAAAAATTAGCAATCGCAGAAAAGAATATATTGTTGTTTATGATAAGAACCAGAAAAAGTTTGTATGTGAATGTGGTTATTTTGAGTTTTATGGCATCCCTTGTTCTCATATAATAGCTGGGATGAGAAGTGAGTATATTGATGAATTTCCAAGCAATCTAGTTTCTAAGAGGTGGTTGAAAACAGCCAAGTCTGCTCATGTGTATTCAATTTCAGAGCCTAGTATTCATTCACAGAATATGAAATTGTTGCGAAAAGGAGCTATGTCTGCCGCATGCAACTATCTCGCAGAAATAGCATGCGAAAAGGATGATGATTTTTCAAGTGTAATGGAAGACATTTATAAGCTGTTGAGGGATGTTCAGAAGAGTCGCAAACCGGGTTGTACAACAAAGAGTGCAGCCTTTAATGTGGGTGATCCAACTGTTGTACAGGGTAGAGGTGCCCCCAAGAAGACCAGAACTGTCACCAAGAGAAGGCATTGCTCAAATTGCAGGGGTATTGGACACACGATTCGTACGTGCCCGGTTTTGCTTTATCCTGATCAAGTCAATAACAGTGAAACAGGTGAATCTGCAAGTGAAGGAATTGAGGACAGCACAGACGACGAGACAAACGTTGGCAGCGTAGATCGGCAAAATAATGGGGCTTCGGTGGCAAGTAAACTTAAATCGCAGCAACGGAAGCAGGGAAATGACTCCTCATCCACCCAAGTATCTAACAAGCGTTCAAATCAGAACACGGTGTCGACAAAACAAAATAAGCGTAAATCTAAGCAGCGAGAAGTCCCAGTCATGATTCATTCAAGCCAAGTATCTGTGAATGAAGTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGAATCTATGAATCAGGTACAGGTTTATAACATGGAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGACTAATGGAGTTCAGGTGTTTCCACAGTTTATACAGCACCAAAACGTCCAGGTTCCTTACCAAGGAGTTCAGATGCAAACGCTTTTTCAAGCTGGACCTTCTGGCTTACTCCCGACATTCTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCAAGTTTAGGAAATAATTGA 1908 0.4151 MNDSSGDNWLNPFDDELYIIDEDDSLNSSPANGLKQGVNEGDNDGENFVDVDEMFETGNDSQKNSDVEVKVMKRITELSADDIRGMDFSSEEEACEFYSKYARIRGFSPRKDNVYKDDDGKIISRQVVCNRAGQRHQKHMHNSGRRKQPKPITRRAMKKYRHNELESDFKSSYGEPVMTTALSGIEYGAAKILTRKMFWEVKGQIEDALGLNVERSEVANIVMMKMRKISNRRKEYIVVYDKNQKKFVCECGYFEFYGIPCSHIIAGMRSEYIDEFPSNLVSKRWLKTAKSAHVYSISEPSIHSQNMKLLRKGAMSAACNYLAEIACEKDDDFSSVMEDIYKLLRDVQKSRKPGCTTKSAAFNVGDPTVVQGRGAPKKTRTVTKRRHCSNCRGIGHTIRTCPVLLYPDQVNNSETGESASEGIEDSTDDETNVGSVDRQNNGASVASKLKSQQRKQGNDSSSTQVSNKRSNQNTVSTKQNKRKSKQREVPVMIHSSQVSVNEVTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQESMNQVQVYNMEPIVQQVHYPVVRASAGLPFLQPTYAVNMTNGVQVFPQFIQHQNVQVPYQGVQMQTLFQAGPSGLLPTFSSTLAAVDRRHNRNSSLGNN* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3616 635 ProSiteProfiles Zinc finger SWIM-type profile. 236 272 IPR007527 GO:0008270
Lja3g3616 635 MobiDBLite consensus disorder prediction 490 516 - -
Lja3g3616 635 Pfam SWIM zinc finger 249 266 IPR007527 GO:0008270
Lja3g3616 635 Pfam FAR1 DNA-binding domain 96 154 IPR004330 -
Lja3g3616 635 MobiDBLite consensus disorder prediction 412 516 - -
Lja3g3616 635 MobiDBLite consensus disorder prediction 24 43 - -
Lja3g3616 635 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 76 155 IPR031052 GO:0006355
Lja3g3616 635 MobiDBLite consensus disorder prediction 433 479 - -
Lja3g3616 635 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 76 155 - -
Lja3g3616 635 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 157 294 - -
Lja3g3616 635 MobiDBLite consensus disorder prediction 132 152 - -
Lja3g3616 635 SMART 26again6 247 274 IPR006564 GO:0008270
Lja3g3616 635 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 157 294 IPR031052 GO:0006355
Lja3g3616 635 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3616 Lja-Chr3 71614492 71617816 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g3616 FAR1 4.9e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3616 - - lja:Lj3g3v0948310.1 281.952