Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3610 ATGGACCGGGAACGGGACCCATGGCTCGACGATCTCGCCGACGATCTCCAGTCCCTAAGTTTCGCCTCCACCACAACCACCGCCGCAACCGCCGACATCAAAAGGAGCACCAGCTTCAGCTCTGAAACCACCACGCTAACCGGCTCCTCCTCCGCCCACCTCGCTCCACCAACCTCCGCCAAGCCTCACGCGCCGTCCTCCGACCCGCGCTGGGCCGCCATCCACCAGATCCGGTCAGAATCCCCCAGCCGCCGCATCGTCCCCTCGGACCTCCGATTCTCCCGCCGCCTCGGCTCCGGCGACATCAGCTCCGTCTACCTCGCTGAACTCAACGAAGGCGCGCTACCGGTGATGTTCGCCGCCAAGGTCATGGACAAGAAGGAGCTCGCGAGTCGCAGCAAAGAAGGTAGAGCCAAGACCGAGAGGGAAATCTTGCAAATGCTTGACCATCCGTTCTTGCCGACGCTCTACGCCACCATTGACGCCGCGAAATGGTTATGCCTCCTCACTGAGTTCTGCCCCGGCGGCGACCTCCACCTCCTCCGCCAGCGCCAGCCGAACAAACGCTTCCCGGAACCCGCCGTCAGATTCTACGCATCAGAAGTATTGGTGGCACTTGAATACCTTCACATGTTGGGGATAGTGTACCGTGATCTCAAGCCTGAGAACGTGTTAGTTCGATCAGACGGTCACATTATGCTCACTGACTTTGACCTCTCCTTGAAATGTGATGATTCCACTTCAACGGCCCAGATCATCTCCACTCAAAACTCTCCTCACATAGCCCCACACAAGGATCCCCGTGCTGAAGCACCACAATTCAACTCCTCTTGTATAATCCCCAACTGTATAGTCCCAGCAGTGTCGTGCTTCCAACCCAAACGCAAGCGGAAGAAGAAGCAGAGCCAGCATACCGGGCCAGAGTTCGTGGCCGAGCCCATGGACATCCGGTCCATGTCATTCGTGGGAACCCACGAATATCTAGCCCCAGAGATCGTCTCTGGGGAAGGCCACGGCAGCGCCGTGGACTGGTGGACCTTAGGGATATTCATATTCGAATTATTTTACGGTGTCACACCTTTTAGAGGCATGGACAATGAGCTAACCTTAGCCAACATTGTGGCTCGTGCATTGGAGTTCCCAAAGGAACCCACCGTGCCAGCCACGGCAAAGGATCTCATCTCACAGTTATTGGTTAAGGACCCAGAAAGAAGGTTAGGGTCAACAATGGGGGCTTCCGCAATCAAGCACCACCCGTTTTTCCAAGGTGTGAATTGGGCATTGCTTAGATGCACAGCACCACCCTATGTGCCCCCACCTTATACTACTAAAGAAGCTGTATCTGATGATAGTTGTCCACAGACCCCTGTTGATTATTATTGA 1383 0.5568 MDRERDPWLDDLADDLQSLSFASTTTTAATADIKRSTSFSSETTTLTGSSSAHLAPPTSAKPHAPSSDPRWAAIHQIRSESPSRRIVPSDLRFSRRLGSGDISSVYLAELNEGALPVMFAAKVMDKKELASRSKEGRAKTEREILQMLDHPFLPTLYATIDAAKWLCLLTEFCPGGDLHLLRQRQPNKRFPEPAVRFYASEVLVALEYLHMLGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSTSTAQIISTQNSPHIAPHKDPRAEAPQFNSSCIIPNCIVPAVSCFQPKRKRKKKQSQHTGPEFVAEPMDIRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGMDNELTLANIVARALEFPKEPTVPATAKDLISQLLVKDPERRLGSTMGASAIKHHPFFQGVNWALLRCTAPPYVPPPYTTKEAVSDDSCPQTPVDYY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3610 460 ProSiteProfiles Protein kinase domain profile. 91 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3610 460 PANTHER OS11G0150700 PROTEIN 6 460 - -
Lja3g3610 460 PANTHER FLIPPASE KINASE 1-RELATED 6 460 - -
Lja3g3610 460 CDD STKc_phototropin_like 89 432 - -
Lja3g3610 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Lja3g3610 460 SMART serkin_6 91 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3610 460 Gene3D Transferase(Phosphotransferase) domain 1 177 257 - -
Lja3g3610 460 Gene3D Transferase(Phosphotransferase) domain 1 316 439 - -
Lja3g3610 460 MobiDBLite consensus disorder prediction 36 56 - -
Lja3g3610 460 SUPERFAMILY Protein kinase-like (PK-like) 71 445 IPR011009 -
Lja3g3610 460 Pfam Protein kinase domain 94 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3610 460 Pfam Protein kinase domain 318 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3610 460 Gene3D Phosphorylase Kinase; domain 1 90 176 - -
Lja3g3610 460 MobiDBLite consensus disorder prediction 36 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3610 Lja-Chr3 71519490 71524484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3610 6 460 AGC Kinase Gene Family AT3G44610 64.894 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja3g3610 Pkinase 2.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3610 K08286 - gmx:100792738 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3610 3 71519490 71524484 Lja3g3610 3 71519490 71524484 ECH