Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3609 ATGGAGGAGCACGAGAATGGCGCAAACGCAATCGACGATGAACCGTTGCCAGGTCCCGCTCCGGCACCACGCGCTCGACCCAAGCGACCGCTCCAGTTCGAGCACGCGTACCTCGACGCTTTACCCTCCGCTAACATGTACGAGAAGAGTTATATGCATCGTGATGTGGTCACTCATGTCGCTGTTTCCGATGCTGATTTTTTCATTACTGGAAGTGCCGATGGGCATTTGAAGTTTTGGAAGAAAAGACCTCTTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGATCTAGCTGTTAGCCTTGATGGTCTGCTGTGCTGTACAATATCAAATGACCGTTCTGTGAAAGTATATGACGTTGTCAACTTTGACATGATGGTCATGATTCGCTTGCCATATGTCCCTGGTGCTGTTACCTGGGTTTACAATCAAGGGGATGTCAAAGCTAGACTTGCTATTAGTGACAAGAACTCGTCTTCCGTGCAAATATATGATGCACGAGCTGGTTCAAATGATCCTATCATCTCCAAAGAGATACACATGTGTCCTATTAAAGTTATGAAGTACAATCCTGTATATGATACTGTAATTTCAGCTGATACAAAAGGGATCATCGAATACTGGAGTCCTACTACACTTCAATTCCCAGAGGATGAGGTCAATTTCAAACTGAAAAGTGATACTAACCTCTTTGAAATCGTAAAATGCAAGACTTCCGTTTCGACTATTGAGGTCAGCCCAGATGGCAAACAATTTTCCATTACATCACCTGACCGTAGGATACGCGTGTTTTGGTTTAGGACGGGTAAACTAAGGCGGGTTTATGATGAATCCCTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACCGGTTGGAAGCCATTGACTTTGGCCGGAGGATGGCCGTTGAGAAGGAATTAGAGAAGACCGAAAGTGCACCACAGCCGAATGCAGTTTTTGATGAAAGTTCTAATTTTCTTATATATGCAACCTTGCTTGGGATTAAAATTGTTAATATGCACACGAATACAGTTGCTCGAATCCTTGGAAAGGTGGAGAATAACGATAGGTTCTTAAAAATAGCTTTATACCAAGGTGATCGAAGTAGCAAAAAGGTAAGAAAGATTCCTACAGCAGCTGCAAATGCCAATGAGAGCAAGGAGCCTTTGACAGATCCTACTCTCCTATGTTGTGCTTTCAAAAAGCACAGGATATATCTATTCAGCCGAAGAGAACCGGAGGAGCCTGAAGATGCAACTAAGGGGAGAGATGTATTCAATGAAAAGCCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGTCAGTTACAACATCACTTCCTGAGAATGTGATTCTACGCACCACTATGGGCGATGTTCACATGAAACTATACCCAGAGGAATGTCCAAAAACTGTGGAGAACTTCACAACTCACTGCCGAAATGGCTATTATGATAATCTTATCTTTCACAGGGTCATCAGAGGTTTCATGATTCAAACAGGAGATCCTTTGGGAGATGGTACTGGTGGGCAATCCATTTGGGGGAGGGAATTTGAGGATGAATTTCACAAAAGTCTAAGGCATGATAGGCCTTTCACAGTGTCAATGGCGAATGCAGGCCCGAATACAAACGGTTCTCAGTTCTTTATCACCACAGTGGCTACTCCGTGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGTGAAGGGAATGGATGTTGTACTGGTAAATTGGCTTCTATTCTTGCATGACCATATGTTTAAATATTCGTTGGTACAAGTGCAAACAGACACTGATACTCACTTTGAGACAGAAAAATGA 1860 0.4323 MEEHENGANAIDDEPLPGPAPAPRARPKRPLQFEHAYLDALPSANMYEKSYMHRDVVTHVAVSDADFFITGSADGHLKFWKKRPLGIEFAKHFRSHLGPIEDLAVSLDGLLCCTISNDRSVKVYDVVNFDMMVMIRLPYVPGAVTWVYNQGDVKARLAISDKNSSSVQIYDARAGSNDPIISKEIHMCPIKVMKYNPVYDTVISADTKGIIEYWSPTTLQFPEDEVNFKLKSDTNLFEIVKCKTSVSTIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKELEKTESAPQPNAVFDESSNFLIYATLLGIKIVNMHTNTVARILGKVENNDRFLKIALYQGDRSSKKVRKIPTAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPENVILRTTMGDVHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIRGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVLVNWLLFLHDHMFKYSLVQVQTDTDTHFETEK* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3609 619 Gene3D - 445 609 IPR029000 -
Lja3g3609 619 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 12 587 IPR044666 -
Lja3g3609 619 SUPERFAMILY WD40 repeat-like 55 283 IPR036322 GO:0005515
Lja3g3609 619 SUPERFAMILY Cyclophilin-like 460 587 IPR029000 -
Lja3g3609 619 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Lja3g3609 619 Pfam WD domain, G-beta repeat 57 81 IPR001680 GO:0005515
Lja3g3609 619 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 462 587 IPR002130 GO:0000413|GO:0003755
Lja3g3609 619 CDD cyclophilin_WD40 463 587 - -
Lja3g3609 619 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 496 513 IPR020892 GO:0003755|GO:0006457
Lja3g3609 619 Gene3D - 40 303 IPR015943 GO:0005515
Lja3g3609 619 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 458 587 IPR002130 GO:0000413|GO:0003755
Lja3g3609 619 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g3609 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Lja3g3609 619 SMART WD40_4 176 215 IPR001680 GO:0005515
Lja3g3609 619 SMART WD40_4 232 271 IPR001680 GO:0005515
Lja3g3609 619 SMART WD40_4 86 125 IPR001680 GO:0005515
Lja3g3609 619 SMART WD40_4 44 81 IPR001680 GO:0005515
Lja3g3609 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 559 571 IPR002130 GO:0000413|GO:0003755
Lja3g3609 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 572 587 IPR002130 GO:0000413|GO:0003755
Lja3g3609 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 544 559 IPR002130 GO:0000413|GO:0003755
Lja3g3609 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 501 513 IPR002130 GO:0000413|GO:0003755
Lja3g3609 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 475 490 IPR002130 GO:0000413|GO:0003755
Lja3g3609 619 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 12 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3609 Lja-Chr3 71459528 71465062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3609 462 584 U-box Gene Family AT5G67530 52.033 3.19e-35 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3609 K12736 - gmx:100792207 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3609 3 71459528 71465062 Lja3g3609 3 71459528 71465062 ECH