Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3600 ATGTATAGCGATTTTAAGACGCAAGCCATTGAGTACGTGAAACAAGCCGTGCAGGAAGACAATGCAAGGAACTATGCCAAAGCTTTCCCTCTCTACATGAATGCTCTGGAGTACTTCAAGATCCATCTTAAGTATGAGACGAACCCTAAGATCAAGGAAGCTATTACCCAAAAATTCACCGAGTACTTGAACCGGGCTGAGGAGATTCGGGCCATCCTTGACTATAAAGGAGGGTCTGGCCCGACCTCCTCCAATTGGGATGTCGCCGTGGCTACGCAGCCCAAGACAAAGCCCCCGGAAGGAGAAGGCGGGGATGGGGAGGACCCTGAGCACGCGAAGCTCAAGGAGAAGCAGAACAACGATGTTGTTGGATTGGAGAGCGCCAAGCAGGAGGCTATGATCTTGCCTATCACAGGTGTTGAACTTCAATTTGGGAAGATGTATACCACTTTTTTCAAGGACCAAGCCATAGAGTACGTGAAGCAAGCCGTACATGAAGATAATGCTGGGAACTATGCCAAAGCCTTCCCTCTCTACATGAATGCTCTAGAGTACTTCAAGACCCATCTTAAGTACGAAACGAACCCTAAGATCAAGGAAGCTATTATCCAGAAATTCACCGAGTACTTGGGCCGGGCCAAGGAGATCCAAGTCGTCCTCGATGATATAGGTCCTGACCCGACCTCCAACAAGGACGACACCATGGCTATGCAGCCCAACGAAGGGGAGGGCGGGGTTAGGGAGGACCTTGAGCAAGCAAAGCTTAGTGAAAAGCGAAATGATGTTGGTGAATTGGAGAGCGTGAAGCAGGAGGTGGTGATCTCGCCTTTCACAGCTTATGACAGGAATGAGGATGGTGGCCCTATTTAA 870 0.4954 MYSDFKTQAIEYVKQAVQEDNARNYAKAFPLYMNALEYFKIHLKYETNPKIKEAITQKFTEYLNRAEEIRAILDYKGGSGPTSSNWDVAVATQPKTKPPEGEGGDGEDPEHAKLKEKQNNDVVGLESAKQEAMILPITGVELQFGKMYTTFFKDQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYETNPKIKEAIIQKFTEYLGRAKEIQVVLDDIGPDPTSNKDDTMAMQPNEGEGGVREDLEQAKLSEKRNDVGELESVKQEVVISPFTAYDRNEDGGPI* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3600 289 MobiDBLite consensus disorder prediction 100 117 - -
Lja3g3600 289 SMART smart 149 225 IPR007330 -
Lja3g3600 289 SMART smart 2 79 IPR007330 -
Lja3g3600 289 MobiDBLite consensus disorder prediction 244 264 - -
Lja3g3600 289 Gene3D - 6 75 - -
Lja3g3600 289 Gene3D - 153 222 - -
Lja3g3600 289 MobiDBLite consensus disorder prediction 93 117 - -
Lja3g3600 289 MobiDBLite consensus disorder prediction 222 264 - -
Lja3g3600 289 SUPERFAMILY MIT domain 2 76 IPR036181 -
Lja3g3600 289 SUPERFAMILY MIT domain 151 222 IPR036181 -
Lja3g3600 289 PANTHER OS01G0141100 PROTEIN 147 255 - -
Lja3g3600 289 PANTHER AAA DOMAIN-CONTAINING 1 115 - -
Lja3g3600 289 PANTHER AAA DOMAIN-CONTAINING 147 255 - -
Lja3g3600 289 PANTHER OS01G0141100 PROTEIN 1 115 - -
Lja3g3600 289 Pfam MIT (microtubule interacting and transport) domain 154 217 IPR007330 -
Lja3g3600 289 Pfam MIT (microtubule interacting and transport) domain 8 70 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3600 Lja-Chr3 71293235 71300641 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3600 K12196 - han:110898097 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3600 3 71293235 71300641 Lja3g3600 3 71293235 71300641 ECH
Lja3g0966 3 9963400 9968009 Lja3g3600 3 71293235 71300641 ECH