Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3598 ATGGGTTTGAGGGAGTGCAATGTAGAAGACAAGAATCTATGCCTTCAAACCCCAAATTTCATTGAATGGCTCAAACCACCTTCATCAGTATCATTATCTCCTACTTCTTTGACAAAGCATGAAGTTATCAGGGAAACTATTCAGTTTTTGCCAAATTCAAGTGAGTTCATCCATAGAAAGCACTTGGAGGAAGACCATGAAGTTTTTGAAGTAAAACAAGAGAAGGTGGAACAGGTGACTGTGTCTTTGCACATTGGATTGCCTAACACAGGATGTTCTGATGAGAAGAAGAGTGTTTTTTATCATGTTAAGGAAGAAGAAGAACCCGTGAAGAAAACCTTACATGATGAGTGTTCTTTTAACCAAGAGAGAAGGTTTTGGATACCAACTCCTGCACAGATCCTTGTTGGTCCCATGCAGTTTTCTTGCTCCATATGCAGCAAGACCTTCAATAGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCTGAATTTAGAAAAGGACCAGACTCCCTCAGAGGAACACAACCAGCTGCTATGCTAAGGCTACCATGCTATTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCCAAGCCCTTGAAGGACTTCAGAACGCTCCAAACCCACTACAAAAGAAAGCATGGAGCAAAACCATTCATGTGCAGAAAATGTGCTAAAAATTTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAATTGTGGTATTGCACTTGTGGTTCAGATTTCAAGCACAAGAGATCTCTTAAAGATCACATTAGATCCTTTGGAAAAGGTCACTCCCCACATCCTTCTCTTGAAGGCTTTGACGACGAGAGAGAATGTGTTACCGGATCCGATGAGGATGAAGTTGCTCATGCATGA 912 0.4189 MGLRECNVEDKNLCLQTPNFIEWLKPPSSVSLSPTSLTKHEVIRETIQFLPNSSEFIHRKHLEEDHEVFEVKQEKVEQVTVSLHIGLPNTGCSDEKKSVFYHVKEEEEPVKKTLHDECSFNQERRFWIPTPAQILVGPMQFSCSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCAKNFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFDDERECVTGSDEDEVAHA* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3598 303 MobiDBLite consensus disorder prediction 271 303 - -
Lja3g3598 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Lja3g3598 303 SMART c2h2final6 141 163 IPR013087 -
Lja3g3598 303 SMART c2h2final6 225 245 IPR013087 -
Lja3g3598 303 SMART c2h2final6 188 220 IPR013087 -
Lja3g3598 303 Gene3D Classic Zinc Finger 183 274 - -
Lja3g3598 303 SUPERFAMILY beta-beta-alpha zinc fingers 127 164 IPR036236 -
Lja3g3598 303 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Lja3g3598 303 PANTHER ZINC FINGER PROTEIN WIP2 38 301 IPR043584 GO:0003700|GO:0010468
Lja3g3598 303 Gene3D Classic Zinc Finger 138 163 - -
Lja3g3598 303 SUPERFAMILY beta-beta-alpha zinc fingers 211 245 IPR036236 -
Lja3g3598 303 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 38 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3598 Lja-Chr3 71270603 71273907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3598 7 293 C2H2 Transcription Factor Family AT1G08290 54.252 1.44e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3598 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3598 - - gmx:100819306 499.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3598 3 71270603 71273907 Lja3g3598 3 71270603 71273907 ECH
Lja3g3598 3 71270603 71273907 Lja3g0975 3 10017398 10023042 PCT