Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3593 ATGTTCCCTTCATGGCCAATGAGAATCAACCAAACCCCAAGAGGAGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGCTCTTTCAAGTCCATTTGATCCAGAATCTCCTGTGAGCAAAAAGGCATCTTCATCAGAAAATCAACAAGCTTTTGATCAGCATCAGCATCTTCAACAGGAGATTATGGCAAGTGATGAAGCACCAAGAACAGGCTCTTCATCACAAAATCAATCAGCAGCCAAATCACAGAATCAAAGAAAAGGAGCTGGTTCCACATCTGATAAACCACTTGATGCAAAGACATTGAGACGATTAGCTCAAAACAGAGAAGCTGCAAGGAAAAGCCGTTTAAGGAAAAAGGCTTATGTGCAGCAGCTAGAATCAAGTAGATTGAAGCTTACTCAACTGGAGCAAGACCTTCAAAGAACTCAAGCACGCTCTCAGGGATTCTTCATGGATTGGGGTGGTGTTGGAGGCAATATAAGCCCTGGAGCTGCAATGTTTGATATGGAATATGCACGGTGGTTAGAAGACGACAGCCGTCTCATGGCAGAGCTCCGTAACGGACTGCAAGCGCCATTATCGGACAGTGATATGAGAGTGATGGTGGATGGATATCTCTCACACTATGATGAGGTTTTCAGGCTCAAGATTGTGGCTGCTAAATCAGATGTTTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGCTGCTTCCTCTGGATCGGTGGTTTTAGGCCCTCTGAGCTTATCACGATGTTGATTCAACAGTTGGAGCCACTGGCGGAGCAGCAGATTATGGGGATGTATGGCGTGCGCCACTCTTCACAGCAAGCGGAGGAGGCTCTTTCTCAAGGCCTTGACCAGCTTCAACAGTCTCTCGTTGACACCATTGCCGGAGGACCTGTTGTTGACGGTGTGCAACAGATGGTGGTGGCCATGGGCAAACTCGCCAATCTCGAAGGATTTGTTCGGCAGGCTGATAATTTGAGACAACAGACTCTTCACCAGTTGTGTCGATTACTAACAGTTCGTCAAGCAGCACGGTGTTTTCTTGTGATTGGAGAGTACTATGCACGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCAAGAGACAACTTGATGAGCGATGAGAACTCATGCCAAACAACCACAGATAACATGCAAATGGTGGTGGTTCAACCTTCTCAGAATCATCATTTCTCCAGTTTCTGA 1227 0.4654 MFPSWPMRINQTPRGGSKSGGESTDSALSSPFDPESPVSKKASSSENQQAFDQHQHLQQEIMASDEAPRTGSSSQNQSAAKSQNQRKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRTQARSQGFFMDWGGVGGNISPGAAMFDMEYARWLEDDSRLMAELRNGLQAPLSDSDMRVMVDGYLSHYDEVFRLKIVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSELITMLIQQLEPLAEQQIMGMYGVRHSSQQAEEALSQGLDQLQQSLVDTIAGGPVVDGVQQMVVAMGKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYARLRALSSLWASRPRDNLMSDENSCQTTTDNMQMVVVQPSQNHHFSSF* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3593 408 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 98 142 IPR004827 GO:0003700|GO:0006355
Lja3g3593 408 ProSiteProfiles DOG1 domain profile. 165 373 IPR025422 GO:0006351|GO:0043565
Lja3g3593 408 MobiDBLite consensus disorder prediction 10 91 - -
Lja3g3593 408 MobiDBLite consensus disorder prediction 1 101 - -
Lja3g3593 408 Pfam bZIP transcription factor 99 141 IPR004827 GO:0003700|GO:0006355
Lja3g3593 408 SMART brlzneu 96 153 IPR004827 GO:0003700|GO:0006355
Lja3g3593 408 Pfam Seed dormancy control 183 257 IPR025422 GO:0006351|GO:0043565
Lja3g3593 408 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 103 118 IPR004827 GO:0003700|GO:0006355
Lja3g3593 408 Coils Coil 119 146 - -
Lja3g3593 408 PANTHER TRANSCRIPTION FACTOR TGA9 1 383 - -
Lja3g3593 408 SUPERFAMILY Leucine zipper domain 102 149 IPR046347 GO:0003700|GO:0006355
Lja3g3593 408 Gene3D - 99 150 - -
Lja3g3593 408 PANTHER TRANSCRIPTION FACTOR TGA9 1 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3593 Lja-Chr3 71170883 71177980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3593 82 408 bZIP Transcription Factor Family AT1G08320 71.951 3.06e-172 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja3g3593 DOG1 2.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3593 3 71170883 71177980 Lja3g0979 3 10066269 10074702 PCT