Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3558 ATGGATTTACTTTCTAGTTCTCTAATTAACACCACCACAGTTGGACTCCTATCTGTGATAACCTTCTTGTTCTTGTTCCTTCACTATCATTATCGCCCTAACAATTCCAAAGAGCCTCCAATAGCTGCAGGTGCATGGCCAATACTTGGTCATCTGATCCCACTATTTGCCGCTAATACACAAACACCACACAGGACCTTGGGTGCCTTGGCCGACCGATATGGGCCTATATACACTATCAAGCTCGGCGCCGCACGCGCCTTGGTACTCAGCAACCGGGAAATGGCCAAAGAGTGCTTCACCACAAACGACATGGTCGTTTCGTCTCGCCCTACACTCGTGGCGACGCAGCACTTGTCATACAACGGGGCCGTGTTTGGCTTCAGACCCTACGGTCCTTACCGTAAAATTGTAACGCTAGAGATCCTTAGTAACCGCCGTGTCCAGCAACTCGGCCATGTCCGTGTCTCGGAAGTTCAAACCTCAATCAATGAGCTATACCGTGTTTGGTGTAATGAAAAGAACGAGGAGTTCGGTTATGCGTTGGTGGAGTTGAAGCAGTGGTTCAGTGAGGTGACGTTCAACACGGTTCTTCGGATGGCCGTTGGGAAGCGCTACTTCGGTGCTTCGGGCGTGGTTGAGGAGGGAGAAGCGCAGAGTTGCATAACGGCTTTGAGGGAGTTCATGCGTCTGATGGGAATGATCACGTTGGGAGATGCTGTTCCTTGGTTGAGATGGTTTGATTTTGGTGGACATGTGAAGGAAATGAAGGAAACTGCTAAGGAGTTGGACAGAGTTTTAGGGAAGTGGTTAGAGGAGCACAAGCAGAAGAAGAAGATGAGGATGGTTGGAAGTGATGATGATCAGGACTTCATGGATGTAATGATTTCACTGCTTGATAGAAAAATAATTCATGGCTTTGATGCTGATGCCATTAAGCCACAGTCTTGGTATACAATCATTATGGGAGGAACAGACACGACCACCGTGACCCTAACATGGGCAATATGTTTGCTATTGGGAAATCCTTTCGTGTATCTTCAAGCCATAGTCAAAGAAACGCTAAGACTCTATCCACCAGGTCCTCTCTCAGGACCACATGAGTTTTCAGAGAGTTGCACTTTAGGAGGCTACCATGTTGAAAAGGGAACCCGACTCATAACAAATCTTTGGAAGATCAACACAGATCCTAGTTTTTGGCCAGATCCGTTAGAATTCAAACCAGAAAGGTTCCTTACAACTCATAAAGATGTTGATGTTAGGGGTCATCATTTTGAGTTGTTACCATTTGGATGTGGTAGGAGGATTTGTCCTGGAATATCATTTGGCCTACAAATGGTTCATTTAACTCTTGCTAGTTTCCTGCATTCCTTTGAAATCTTAAATCCATCCACCGAGCTTGTTGACATGACTGAATCCTTTGGATTGACCAATTTCAAAACTGCTCCACTTGAGGTTCTTGTTAAACCAAGTTTGTCTCCAAGTTGTTATGAAACCATGTGA 1503 0.4564 MDLLSSSLINTTTVGLLSVITFLFLFLHYHYRPNNSKEPPIAAGAWPILGHLIPLFAANTQTPHRTLGALADRYGPIYTIKLGAARALVLSNREMAKECFTTNDMVVSSRPTLVATQHLSYNGAVFGFRPYGPYRKIVTLEILSNRRVQQLGHVRVSEVQTSINELYRVWCNEKNEEFGYALVELKQWFSEVTFNTVLRMAVGKRYFGASGVVEEGEAQSCITALREFMRLMGMITLGDAVPWLRWFDFGGHVKEMKETAKELDRVLGKWLEEHKQKKKMRMVGSDDDQDFMDVMISLLDRKIIHGFDADAIKPQSWYTIIMGGTDTTTVTLTWAICLLLGNPFVYLQAIVKETLRLYPPGPLSGPHEFSESCTLGGYHVEKGTRLITNLWKINTDPSFWPDPLEFKPERFLTTHKDVDVRGHHFELLPFGCGRRICPGISFGLQMVHLTLASFLHSFEILNPSTELVDMTESFGLTNFKTAPLEVLVKPSLSPSCYETM* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3558 500 PANTHER CYTOCHROME P450 82C3-RELATED 1 345 - -
Lja3g3558 500 SUPERFAMILY Cytochrome P450 45 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS E-class P450 group I signature 389 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS E-class P450 group I signature 71 90 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS E-class P450 group I signature 95 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS E-class P450 group I signature 192 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS E-class P450 group I signature 348 366 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS P450 superfamily signature 349 360 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 PANTHER CYTOCHROME P450 82C3-RELATED 345 498 - -
Lja3g3558 500 PANTHER CYTOCHROME P450 82A2 1 345 - -
Lja3g3558 500 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Lja3g3558 500 Pfam Cytochrome P450 346 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 Pfam Cytochrome P450 45 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 Gene3D Cytochrome P450 28 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja3g3558 500 Coils Coil 253 273 - -
Lja3g3558 500 PANTHER CYTOCHROME P450 82A2 345 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3558 Lja-Chr3 70597131 70599242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3558 19 497 Cytochrome P450 AT4G31940 45.155 5.35e-154 447