Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3557 ATGGAATTGGTTTCCAGAGAAGTGCCCTTGTCAATGGCTACCCCCTCCATGTTTCCAGGGTTCAGATTCTGCCCCACAGACGAGGAGTTGATTTCTTATTACCTCAGGAAGAAGCTTGATGGCCATGAAGAGAGTGTTCAGGTCATTTCTGAGGTTGAAATTTGTAAATATGAGCCATGGGATTTACCAGCAATGTCGTTCATTCAATCAGATAATGAGTGGTTCTTCTTCTCTCCCCGTGGAAGGAAGTACCCGAATGGTTCTCAAAGTAAAAGAGCAACTGAATGTGGCTATTGGAAGGCCACTGGGAAAGAGCGCAATGTGAAATCAGGCTCTAACGTTATAGGCACAAAGCGGACTCTGGTATTCCACTTGGGGCGTGCACCGAAAGGAGAGAGGACCGAATGGATCATGCACGAGTACTGCATCAATGACAAGTCTCAGGATTCTTTGGTGGTTTGTCGCCTTAAGAGGAACACAGAGTTCCGTTTGAGCGATGCTTCAAATAGAGCTTCTTCAAGTCAAATCCAACCAGTGCATTCACATGAAAGCTCAGATGGAGGGATTGATCAAAGTCAAAGGGGTCTGGGTGAGGGTGCGCAAGACAAAGAGGTTGGGTGCAGCTCCAAGCGGAGCAGCAGCAGTTATGGTTCGGAACAAATTGAATCTGTATCTGAATCGAATCAACGTCCAGCTAATGACGGTCATTTGACTGAATCTTCTGGTCACCTAAAGGAAGTAGATGAAGAGGATTGTTATGCTGAGATACTGAAGAATGATATCATCAAATTAGATGAATCCTCAATCTCGAAAGCCGGTCACACAATACCAGAGGACCCTGCACAGTTGGATAACTACCAAGGCACAGCGCAACGAAGGATAAGATTAAGGGTTAAAAGGCCAAGGCGTTCTGCTGAAGGAGCTCGTTGCTCGAGCAAAATGCACTCATCCAAGAGTAGCTTCTTTGCCAGAATTACCACCAGATTGGTGGTGGTATTTGCTTTCTTGGTTTTCACTTTGGTAGGTGTATGTTTTTGGTCTTCATTTGGTACTTGGTCACGAACAAGTGAAATTTAG 1077 0.4531 MELVSREVPLSMATPSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVEICKYEPWDLPAMSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVVCRLKRNTEFRLSDASNRASSSQIQPVHSHESSDGGIDQSQRGLGEGAQDKEVGCSSKRSSSSYGSEQIESVSESNQRPANDGHLTESSGHLKEVDEEDCYAEILKNDIIKLDESSISKAGHTIPEDPAQLDNYQGTAQRRIRLRVKRPRRSAEGARCSSKMHSSKSSFFARITTRLVVVFAFLVFTLVGVCFWSSFGTWSRTSEI* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3557 358 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 13 350 - -
Lja3g3557 358 SUPERFAMILY NAC domain 6 158 IPR036093 GO:0003677|GO:0006355
Lja3g3557 358 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Lja3g3557 358 MobiDBLite consensus disorder prediction 206 236 - -
Lja3g3557 358 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 13 350 - -
Lja3g3557 358 Gene3D NAC domain 26 164 IPR036093 GO:0003677|GO:0006355
Lja3g3557 358 MobiDBLite consensus disorder prediction 165 191 - -
Lja3g3557 358 MobiDBLite consensus disorder prediction 165 244 - -
Lja3g3557 358 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3557 Lja-Chr3 70582962 70586120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3557 4 282 NAC Transcription Factor Family AT2G27300 52.313 1.46e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja3g3557 NAM 4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3557 - - lja:Lj0g3v0223189.1 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3557 3 70582962 70586120 Lja3g3557 3 70582962 70586120 ECH