Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3553 ATGTCTTTCAATTTCAACAAGAGAAAGATCATGAAAACGCTCCTCAAATCCAACGGAGGAGGTTGTGGCTGCAAAAAACCAAAACTCTCTGACGTGCACCACCCCACCCCAAAACCCAAAATCTCCATCTACCAAAACAAAAACCCTAGCAGCCTCACCTCGTCTTCCACCACCGCCACCACTTCCGCCGCCGATGAAGACTTCACTCCCACCACCATCTCTGAACCTGACACCACCACCACCAACAACAAAAATCACTTCATCCCCAAACCGAGCCCGAAACTCATAAACAGCATCGCCATTGAGAAGGACTCAAAGGATCCACACAAAGATTTCCGGCATTCCATGCTCCAAATGATCTTCGAGCGAGAGATCTACTCAGAATCCGAACTTCAACAGCTTCTCGAGTGTTTTCTTCAACTGAACGCGCCGTGCCACCACCACATCATCATTCAAGCCTTCATCGAGATCTGTGAGGAAATATTCCCAAAGAAGCTCGATGATGGCAGCAGTGGTGGTGGCAAACCGGCGCGCAGGAACCAGAACGTTCCACAAAGTCGGTGA 564 0.4947 MSFNFNKRKIMKTLLKSNGGGCGCKKPKLSDVHHPTPKPKISIYQNKNPSSLTSSSTTATTSAADEDFTPTTISEPDTTTTNNKNHFIPKPSPKLINSIAIEKDSKDPHKDFRHSMLQMIFEREIYSESELQQLLECFLQLNAPCHHHIIIQAFIEICEEIFPKKLDDGSSGGGKPARRNQNVPQSR* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3553 187 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 99 160 IPR006458 -
Lja3g3553 187 MobiDBLite consensus disorder prediction 166 187 - -
Lja3g3553 187 Pfam Transcriptional repressor, ovate 105 162 IPR006458 -
Lja3g3553 187 MobiDBLite consensus disorder prediction 26 92 - -
Lja3g3553 187 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 4 179 IPR038933 GO:0045892
Lja3g3553 187 MobiDBLite consensus disorder prediction 41 88 - -
Lja3g3553 187 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 4 179 - -
Lja3g3553 187 ProSiteProfiles OVATE domain profile. 101 160 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3553 Lja-Chr3 70493721 70494621 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja3g3553 Ovate 7.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3553 - - gmx:102670259 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3553 3 70493721 70494621 Lja3g3553 3 70493721 70494621 ECH
Lja3g3553 3 70493721 70494621 Lja3g1016 3 10422764 10424178 PCT