Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3551 ATGAAGCGCCGACTTCCCTTCTCTTCCACGAACCCTCCTCCATTCGCTCCCACCGCCGATTACCACCGCTTCGTCTCCGACCACCGCCATCCACCACCTCACACCGACGCCGAAGCTGTGGTCGTCAACTCCCCTATGCCTATATCAGGAAAGATAAGGAAGTCAAGCAAAGCCTCTAGACCTACAAAATGCAATAGGAGCAAGAGATTTGAACCTCAAACTCCAGGCTCAATCTTAGGTTCTCCTTCAGGCAATAATTTAGCTCTTGCTGGTTCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATTCTTGATCTGAATAATGCTGCTGACACATTAGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATCGGCCTTATAGAAAAGAAGCTTAAGAACAGAATTCAATGGAAGGGCCAGGATGTTTCAAGACCAGGGGAGGCTAATGATAGTTTTGCTAGTATACAGGCTGAAGTTGAAAATCTTACAATAGAGGAGCACCGTTTAGATGAGCACATAAGAGAGGTGCAAGACAGACTAAGGGATCTTAGTGAAGATGAAAACAATCAAAAGTATCTTTTTGTGACTGAGGAAGATATGCAGACCTTGCCTTGCTTCCAGGATAAAACCCTGATAGCAATTAAAGCCCCACATTGCACCACTTTGGAGGTCCCTGAACCTGATGAGGCTGTTGATTATCCCCAGAGGAGATTCAGGATAGTCCTGAGAAGCACAATGGGTCCAATAGATGTATACCTTATTAGTCAATTTGTGGAAAAGTTTGAAGAGATTAGGGGTGTTGATGTGGCACCCACTCTTCCATCCAGTCCAGAGTTTAACAAGCATCAACCAATAGTGGTCTCAGAGGATATAGGGAGTGACCAAGAAATGCAAGCACAAGATGTTAATGGGACTAGGTCAGATTTACCTACTTCACAGGACTTTGCCAGTGGGATCATGAAGATTGTTCCTTCAGATTTTGATAGCGATACTGATTACTGGCTTTCATCTAATGCTGATGTTAGCATAACAGACATGTGGAAAACAGAACTTACAGCAGGTGTTGAATGGAATAATCTGTACACAGTTCAAGAAGATTATTGTATGACTCATGCGAGCCCACCACCACTGAACGTAAATGAAGTGCCTTTGGTATCTAACACAACTGCAGGTTGA 1236 0.4337 MKRRLPFSSTNPPPFAPTADYHRFVSDHRHPPPHTDAEAVVVNSPMPISGKIRKSSKASRPTKCNRSKRFEPQTPGSILGSPSGNNLALAGSCRYDSSLGLLTKKFINLIKQAEDGILDLNNAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGQDVSRPGEANDSFASIQAEVENLTIEEHRLDEHIREVQDRLRDLSEDENNQKYLFVTEEDMQTLPCFQDKTLIAIKAPHCTTLEVPEPDEAVDYPQRRFRIVLRSTMGPIDVYLISQFVEKFEEIRGVDVAPTLPSSPEFNKHQPIVVSEDIGSDQEMQAQDVNGTRSDLPTSQDFASGIMKIVPSDFDSDTDYWLSSNADVSITDMWKTELTAGVEWNNLYTVQEDYCMTHASPPPLNVNEVPLVSNTTAG* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3551 411 Coils Coil 110 130 - -
Lja3g3551 411 Pfam E2F transcription factor CC-MB domain 176 275 IPR032198 GO:0046983
Lja3g3551 411 SUPERFAMILY E2F-DP heterodimerization region 173 276 IPR037241 -
Lja3g3551 411 Coils Coil 179 206 - -
Lja3g3551 411 MobiDBLite consensus disorder prediction 1 83 - -
Lja3g3551 411 MobiDBLite consensus disorder prediction 68 83 - -
Lja3g3551 411 CDD E2F_DD 170 276 IPR032198 GO:0046983
Lja3g3551 411 SUPERFAMILY "Winged helix" DNA-binding domain 94 157 IPR036390 -
Lja3g3551 411 PANTHER TRANSCRIPTION FACTOR E2F 2 46 IPR015633 GO:0000978|GO:0006357
Lja3g3551 411 PANTHER TRANSCRIPTION FACTOR E2F 46 393 IPR015633 GO:0000978|GO:0006357
Lja3g3551 411 Gene3D - 90 161 IPR036388 -
Lja3g3551 411 SMART E2F_TDP_2 94 159 IPR003316 GO:0005667|GO:0006355
Lja3g3551 411 Gene3D - 166 276 - -
Lja3g3551 411 Pfam E2F/DP family winged-helix DNA-binding domain 96 159 IPR003316 GO:0005667|GO:0006355
Lja3g3551 411 PANTHER TRANSCRIPTION FACTOR E2FB 2 46 - -
Lja3g3551 411 PANTHER TRANSCRIPTION FACTOR E2FB 46 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3551 Lja-Chr3 70479878 70486389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3551 2 403 E2F-DP Transcription Factor Family AT5G22220 52.116 2.66e-136 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja3g3551 E2F_CC-MB 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3551 K06620 - gmx:100819817 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3551 3 70479878 70486389 Lja3g3551 3 70479878 70486389 ECH