Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3547 ATGGGGTCTAGAATGGATCAGTATGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGTGCTGCTATTCTTGTTAACCACAGGGCTGAGAAGAAGAAATATGTGTTGAAGAAAATTAGGCTTGCGCGGCAGACTGAACGTTGCAGAAGATCTGCTTATCAAGAGATGGCGCTTATTGCTCGAATTCAGCACCCCTACATTGTTGAATTTAAGGAGGCATGGGTTGAGAAAGGATGTTTTGTCTGCATTGTTACTGGATATTGTGAAGGTGGAGACATGGCTGCCTTGATGAAAAAGTCAAATGGGGCTTACTTTCCAGAGGAGAAGCTCTGCAAGTGGATTACTCAATTACTGTTGGCAGTAGAATACCTACATTCAAATTTTGTTTTACACCGTGACCTGAAGTGTTCCAACATATTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGACTTCTTCGGTGGTAGGAACTCCCAACTACATGTGTCCTGAACTGCTGACAGATATTCCTTATGGATTCAAATCTGATATTTGGTCATTAGGATGTTGTATATATGAGATGGCTGCTCATCGCCATGCTTTTAAAGCCTTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCCGCTATTGGTCCTTTGCCTCCCTGTTATGCCCCATCCTTGAAAACACTGATAAGGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCTTAAAGCACCCTTATTTGCAGCCTTATGTTCATCAATATCGTTCATCTTTCTGTTCTCCAACAGCCAGTTCTCCTGAAAAGCTAATATCTGCTGCCCATGGTTCTCAGAAAAATATGGCAGGAAGTCAAAACAGTAGTAGTACAAGTAGTGACAAAGATAGTTTGATGTCAAATGAGAGAAACATTACAAAAGCAGTCCCAAAGTGTGAGAGCGAAACCACTGAGGCAGACCTGGAATCATTTGATGATGATAGCTCTGAGCTTCCTCTGCCCAGTGAAGAAGGAAGTAGCTCCAGTAATGTCAATACCAAAACAGATAAACAGGAAGTTATGAAGCAAACTCACAAAGAGCGCCATTCTAATGCTGTATTTAAGCAACCAAAAAAAACGAAGAACATAGTGATGGCATTAAAAGATGAAAAAGTTAGAGAGACAAGTTCTCCCCTGAGAAGCAATAGAATAAAGGCTGGTGGCGTATCAACACAGAAAATTAATACAGAAACTGAAACACCGTCCAAATTGCCCAAGCCTAATTTTGGTGTTTCTGCTTTGAAGCCTAATTTAGATGTGGCAACTGATGCACCTTCAAAAGCTACCCCTGATTCTGCAAAACAGATGCAGGGACGACATACTTCAAAGCATCAGTTACCGGTGATAAATTCAACACCAAAAAATAGACCTCGATATAATGTGACTTCATCTGGTCCAATTAAACACATAGAAGATCATGGAGTTCCAATAAGGTCTAAGCAAAAGACTCCTCCAAGCTCACTTAAACCACCTTCATTTCCAGGACGTATGAGGCAGGCTGGGCTCGACAATCCAAATGTCGCAAATGATACAGGAAAGTCAAGTCAAAATAAAATAGCTCAGGAGGCTAAGATGAGTCATCAACAGTTGACTAACGGCCATCCACAACATATTTCTAAGGAATTTACTAGAGAGCCTTTGAAGGCTTTTGAAAGTAGTTCCAAAGGAATAGAGACTAAAAGCAGCAATTCTGTCTCATCTTCAGTCTCTATTCAAGGATTCGAACTTTCTGACTTTGCAACCACTTTTATTGACTTGAGTGCACCAATGCTTCCTGATCATGAGTGTTCAAACCACCCTGAAAATGTGGAATCACATCCAAATAGCAGCTCACCTCCTCAAAATTTGTCTGGGGAAACCTCTCTGCTTACACCAAATTTTCGGCATGCAACAATTACTAGTATTGAGAAAGTGAGCCCCAGTTTAACTCTTGATCACTCAGTTCAAGATTCTCAGGTAAAGTTTGCTTCTGATGATAGTTTTCTCAGAAATCAAACAACTACACCTGCTGCCTCCGGGTGTGATAAGAGATCTGTAGATCCCTCTGCAGAAGTCACGCCACAAATCAAAGAACTTCAAAATATTTCTGAGGAAATGACTTCAACCAAGTCTCTCAAACACCAACTCCCATCAGTGGCTGAAACTGCTACTCAGATTATCTCGACTAAAATTTCAAGCCAGAAAGTTTTACAAGAAGAGAAAGAAACAGTTTTACAGAATCCAGCACCAGAAAAGCCAGCTTCTGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCACGTTATACGCCATAGCAGTTACCGTATGGGGAGTGAGCTAGTGAAGGAATCTGTGGTTCAAAATGTAGATGTTGGTAAATTTATCAACATTGCAAGGGATAATTCAGAAACGAGAAAAGTGAAGTCAAATTGCTCTGAAGCTACAAACTCGGAGTCAAATATTTCTGATAATTTGGAAATTAGAAACCTGAGTACTCCTAAATCTCCTAATGTTAAATCTTCGAGTTTCTCTGACTCGTTGAGCTTGAAATCAAGTATTTCTGACCATCCTAGTGTTAAGAAACAAGATGTGAAAACCCCTGATACTCTTCTTTCAAAATCTGATTCCACTGGCTGTACAAAATTTAACCCTCCTACAACTGCAGAGGAAGCACCAGTAAAGGAAACTTTGGATGTCAAATCTTCCACGCAGAGAGCTGAGGCACTTGAAGGGCTGCTAGAGTTGTCTGCAGATTTGCTGCAGCAAAATAGACTCGAGGAACTTTCCATTGTTCTGAAGCCTTTTGGAAAAGACAAGGTCTCCCCAAGGGAGACAGCAATTTGGTTAGCCAAGAGTCTAAAAGGGTTGATGGTTGATCATTGA 2940 0.4116 MGSRMDQYEIMEQIGRGAFGAAILVNHRAEKKKYVLKKIRLARQTERCRRSAYQEMALIARIQHPYIVEFKEAWVEKGCFVCIVTGYCEGGDMAALMKKSNGAYFPEEKLCKWITQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLTSSVVGTPNYMCPELLTDIPYGFKSDIWSLGCCIYEMAAHRHAFKAFDMAGLISKINRSAIGPLPPCYAPSLKTLIRGMLRKNPEHRPTASEILKHPYLQPYVHQYRSSFCSPTASSPEKLISAAHGSQKNMAGSQNSSSTSSDKDSLMSNERNITKAVPKCESETTEADLESFDDDSSELPLPSEEGSSSSNVNTKTDKQEVMKQTHKERHSNAVFKQPKKTKNIVMALKDEKVRETSSPLRSNRIKAGGVSTQKINTETETPSKLPKPNFGVSALKPNLDVATDAPSKATPDSAKQMQGRHTSKHQLPVINSTPKNRPRYNVTSSGPIKHIEDHGVPIRSKQKTPPSSLKPPSFPGRMRQAGLDNPNVANDTGKSSQNKIAQEAKMSHQQLTNGHPQHISKEFTREPLKAFESSSKGIETKSSNSVSSSVSIQGFELSDFATTFIDLSAPMLPDHECSNHPENVESHPNSSSPPQNLSGETSLLTPNFRHATITSIEKVSPSLTLDHSVQDSQVKFASDDSFLRNQTTTPAASGCDKRSVDPSAEVTPQIKELQNISEEMTSTKSLKHQLPSVAETATQIISTKISSQKVLQEEKETVLQNPAPEKPASGHLPPAFDDVIHVIRHSSYRMGSELVKESVVQNVDVGKFINIARDNSETRKVKSNCSEATNSESNISDNLEIRNLSTPKSPNVKSSSFSDSLSLKSSISDHPSVKKQDVKTPDTLLSKSDSTGCTKFNPPTTAEEAPVKETLDVKSSTQRAEALEGLLELSADLLQQNRLEELSIVLKPFGKDKVSPRETAIWLAKSLKGLMVDH* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3547 979 MobiDBLite consensus disorder prediction 628 647 - -
Lja3g3547 979 Gene3D Transferase(Phosphotransferase) domain 1 90 335 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 827 841 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 288 317 - -
Lja3g3547 979 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Lja3g3547 979 MobiDBLite consensus disorder prediction 847 907 - -
Lja3g3547 979 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3547 979 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3547 979 MobiDBLite consensus disorder prediction 618 647 - -
Lja3g3547 979 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3547 979 CDD STKc_Nek 7 262 - -
Lja3g3547 979 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 723 966 - -
Lja3g3547 979 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 583 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 346 363 - -
Lja3g3547 979 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 723 966 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 447 526 - -
Lja3g3547 979 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 583 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 888 903 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 288 376 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 847 874 - -
Lja3g3547 979 MobiDBLite consensus disorder prediction 822 841 - -
Lja3g3547 979 SUPERFAMILY Protein kinase-like (PK-like) 4 310 IPR011009 -
Lja3g3547 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lja3g3547 979 MobiDBLite consensus disorder prediction 454 488 - -
Lja3g3547 979 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3547 Lja-Chr3 70438951 70445914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3547 14 263 MAP Kinase Kinase Kinase AT1G53570 31.373 8.42e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lja3g3547 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3547 K08857 - gmx:100780141 1336.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3547 3 70438951 70445914 Lja3g1023 3 10516233 10523020 PCT