Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3543 ATGGAAGCTATGAAAATTTCAATCTTTTTCTTTTTTGGTGTAATTATCACAATGGGCTATGGTGCAACAAACCCAAATGATCTCAAGGTTCTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTCTGAAATGGCCAGACAAGGGAGATGATCCATGTGGTCCTCCTACATGGCCTTATGTGTTCTGTTCTGGAGACAGAGTGAATCAGATTCAGGCTAAGAATCTTGGTCTCAGAGGATCATTGCCTCAAAACTTCAATCAACTCTCAGAACTCTACAATTTGGGGCTTCAGCGCAACAATCTCAGTGGAATGTTACCTACTTTTAGTGGATTGTCCAAGTTGGAATTTGCATTCTTGGACTACAATGCATTTGATGCAATCCCAGTTGATTTCTTCACTGGACTCAGCAGCCTCAGGGTCTTGTCTTTGGAGGAAAATCCACTGAATTATAGTAGTGGGTGGTCATTTCCTTTGGATTTGGAAAAATCAGTGCAGTTAACAAATCTTTCTCTGGTGCACTGTAATTTGGTTGGAGCATTACCTGATTTCCTAGGCACATTGCCATCCCTCACAAATCTGAGGCTTTCAAACAATAAACTTTCTGGTCCTATTCCAGAAACTTTTGCTCAATCTTCAATCCAGGTTTTGTGGTTGAATAATCAAGAAGGTGGTGGGTTCTCAGGTTCTATTGATGTTATTGCTTCAATGGTTTTCTTAAGACAGGCTTGGCTCCATGGAAACCAGTTCACTGGGACAATTCCACAGAATATTGGAAATCTCACTTCCTTGCAGGAACTCAACTTGAATAGTAACCAACTTGTTGGCTTGGTTCCTGATTCTCTAGCAAAAATGGACCTTGAAATACTGGTGCTAAATAATAACATGCTAATGGGTCCAATTCCAGAGTTCAAGGCTGCTAATTTTTCCTATGATAACAACTTCTTTTGTCAAAAAAAGCCTGGAATTGAGTGTGCACCTGAAGTTACTGCACTGCTTGATTTTCTGGATCACCTGAGTTACCCTTCATTTCTCATTTCTGATTGGTCAGGTAATGAACCATGCACAGGAAGCACAGGGCCATGGTTTGGATTGAGTTGCAGTTCCAATTCTTCTGAGGTATCTATAATCAATCTACCTAGACACAAGCTCAATGGTACCTTAAGTCCATCACTTGCTAAGTTAGATTCACTTCTTGAAATTAGGCTTGCAGGAAATAATATAAGTGGCACAATTCCTAGTAACTTCACTGAAATGAAATCTTTAAGGTTGTTGGATTTAAGTGATAACAACCTTGAGCCTCCATTGCCAGAATTTCATGATGTGAATGTTATCACTGTTGGTAACCCCCTTAGTCAGAATGACACTGGAGGGAGTTCTATGCCTATTAACAACCCACCTTCTTCACTTTCCCCATCCTCTCATGAGAATCATGTTCCAAGCTCAAATCAACCCAAATCAAAAGACTTCAAAACAGTGGCAATAGTGGCTGGGATTGTAGTATTTGCAGTTTTAGCTCTTTTGGTTATTTATCTCTGCCTGTGTTGCTGGAAGAACAAGAAAGCTTCCTTGGATGCTCCAAGTTCCATTGTGGTTCACCCTCGCAATCCATCTGATCAAGATAACATGGTTAAAATTGCAGTTTCAAACAATACCACTAGCAGCTTATCATCAAAGACTGGGACAAGTTCTCTGAGTAACATTAGTGGTGAAACTCAAAACTCTCACATGATTGAGGCTGGAAACCTTTTGATTTCTGTACAAGTACTACGTAAGGTTACCAAGGATTTTGCTTCAGAAAATGAGCTAGGCCGTGGTGGATTTGGAACTGTTTACAAGGGGGAGCTAGAAGATGGGGCGAAAATAGCAGTGAAGAGAATGGAGCATGGCGTTATTAGCAGCAAGGCACTGGATGAGTTTCAAGCTGAGATAGCTGTTCTATCCAAGGTCCGTCACCGCCATTTAGTATCCTTGTTGGGGTATTCCATTGAAGGCAATGAAAGGCTTTTGGTTTATGAGTATCTGCCTCTTGGTGCTCTGAGCCAGCATCTTTTCCATTGGAAAAGCTTGGACTTAAAGCCTTTGTCTTGGTCACAGAGGCTTGCAATAGCACTAGATGTTGCGAGAGGGATGGAATACCTTCATGGCCTTGCCCGCGAAACCTTTATCCATCGAGACCTCAAGTCTTCCAATATTCTGCTAGGCAATGATTTTCGCGCAAAAGTTTCAGATTTTGGTCTAGTGAAGCTTGCCCCGGATGGTGAGAAGTCTGTAGTAACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGCTGATGTGTTCAGCTATGGTGTGGTGTTAATGGAACTTCTGACAGGACTAATGGCGCTTGATGAGAGCAGGCCAGAGGAAAGCCGGTACTTAGTTGAATGGTTTTGGCGAGTCAAATCGAGAAAAGAGAATCTCATGGCTGCCATTGATCCAACTCTGGAGACAACTGATGAGACTTTTGAGAGTATAAGCATTGTAGCTGAACTTGCAGGACACTGTACTGCTAGGGATTCATACCACAGGCCAGATATGAGTCATGCAGTCAATGTACTTTCAGCACTAGTGGAAAAATGGAGACCAGTTTATGATGAATTAGATTGTTACTCTGGCTTTGACTGCACTCAACCACTTCCCCAAATGTTGGAGATTTGGAAGGAAGCAGAAAGCAAGGATGTTACCTATAGTGCTAGTTTTGAAGACACCAAAGGCAGTAGTACAGCCAGACCTTATGGTTTTGCAGATGCTTTCACTTCTGCTCATGCTCGATGA 2838 0.4207 MEAMKISIFFFFGVIITMGYGATNPNDLKVLNDFRKGLENPELLKWPDKGDDPCGPPTWPYVFCSGDRVNQIQAKNLGLRGSLPQNFNQLSELYNLGLQRNNLSGMLPTFSGLSKLEFAFLDYNAFDAIPVDFFTGLSSLRVLSLEENPLNYSSGWSFPLDLEKSVQLTNLSLVHCNLVGALPDFLGTLPSLTNLRLSNNKLSGPIPETFAQSSIQVLWLNNQEGGGFSGSIDVIASMVFLRQAWLHGNQFTGTIPQNIGNLTSLQELNLNSNQLVGLVPDSLAKMDLEILVLNNNMLMGPIPEFKAANFSYDNNFFCQKKPGIECAPEVTALLDFLDHLSYPSFLISDWSGNEPCTGSTGPWFGLSCSSNSSEVSIINLPRHKLNGTLSPSLAKLDSLLEIRLAGNNISGTIPSNFTEMKSLRLLDLSDNNLEPPLPEFHDVNVITVGNPLSQNDTGGSSMPINNPPSSLSPSSHENHVPSSNQPKSKDFKTVAIVAGIVVFAVLALLVIYLCLCCWKNKKASLDAPSSIVVHPRNPSDQDNMVKIAVSNNTTSSLSSKTGTSSLSNISGETQNSHMIEAGNLLISVQVLRKVTKDFASENELGRGGFGTVYKGELEDGAKIAVKRMEHGVISSKALDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYLPLGALSQHLFHWKSLDLKPLSWSQRLAIALDVARGMEYLHGLARETFIHRDLKSSNILLGNDFRAKVSDFGLVKLAPDGEKSVVTKLAGTFGYLAPEYAVMGKITTKADVFSYGVVLMELLTGLMALDESRPEESRYLVEWFWRVKSRKENLMAAIDPTLETTDETFESISIVAELAGHCTARDSYHRPDMSHAVNVLSALVEKWRPVYDELDCYSGFDCTQPLPQMLEIWKEAESKDVTYSASFEDTKGSSTARPYGFADAFTSAHAR* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3543 945 SUPERFAMILY L domain-like 328 439 - -
Lja3g3543 945 Gene3D Ribonuclease Inhibitor 25 324 IPR032675 -
Lja3g3543 945 SMART serkin_6 598 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3543 945 Gene3D Phosphorylase Kinase; domain 1 558 675 - -
Lja3g3543 945 CDD STKc_IRAK 604 874 - -
Lja3g3543 945 Pfam Leucine rich repeat N-terminal domain 328 369 IPR013210 -
Lja3g3543 945 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Lja3g3543 945 Pfam Protein tyrosine and serine/threonine kinase 601 872 IPR001245 GO:0004672|GO:0006468
Lja3g3543 945 PANTHER OSJNBA0070M12.3 PROTEIN 5 945 - -
Lja3g3543 945 SUPERFAMILY Protein kinase-like (PK-like) 573 884 IPR011009 -
Lja3g3543 945 SMART LRR_typ_2 137 160 IPR003591 -
Lja3g3543 945 SMART LRR_typ_2 113 136 IPR003591 -
Lja3g3543 945 SMART LRR_typ_2 189 212 IPR003591 -
Lja3g3543 945 SMART LRR_typ_2 262 285 IPR003591 -
Lja3g3543 945 SMART LRR_typ_2 90 112 IPR003591 -
Lja3g3543 945 SMART LRR_typ_2 420 442 IPR003591 -
Lja3g3543 945 SMART LRR_typ_2 396 419 IPR003591 -
Lja3g3543 945 MobiDBLite consensus disorder prediction 451 487 - -
Lja3g3543 945 SUPERFAMILY L domain-like 23 306 - -
Lja3g3543 945 ProSitePatterns Protein kinases ATP-binding region signature. 604 626 IPR017441 GO:0005524
Lja3g3543 945 PANTHER OSJNBA0070M12.3 PROTEIN 5 945 - -
Lja3g3543 945 Gene3D Transferase(Phosphotransferase) domain 1 677 888 - -
Lja3g3543 945 ProSiteProfiles Protein kinase domain profile. 598 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3543 945 Gene3D Ribonuclease Inhibitor 328 454 IPR032675 -
Lja3g3543 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3543 Lja-Chr3 70353212 70356687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3543 81 867 Receptor kinase-like Gene Family AT1G55610 30.046 1.05e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lja3g3543 PK_Tyr_Ser-Thr 5.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3543 - - gmx:100785090 1476.07