Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3536 ATGGCGACGCACTTTCATGGCAGCACCTCAGAAATTCATGAATCCTCTTCTGCTTCTGCTGCTGATGGTTTACACGCACAAACACTTCACCTCATGAACTCAACCTACACCCCACACCACAACCACCACAACATGCTCCTCCTCAACCACCCCAACAACCTCTCCACTTTCCACCACGCGCCGCCGCTCCAACCACCCTCACCCAACAACCACCACCCCGTGATTCACGACATCACCACCGCCTTCCACGCACCGAACTACAACTTGTGGGGCCCAGCAACTGAGCAGCCACGGTCCGCGGCGGCAACAACAACCCAGCCCATCAGCATCGGAGGAGGCGCTTTCCGGCAGCCAAGCCAGCAGGGTCTTTCCCTCAGCCTTTCCTCAGACCAAACAGCTTACAGGCAGTTTACCGGCGAGCTTGACGCCGTCCCTGCGGCGGGGACCGGTAACTCTCCGGTGAGCGTTGTTTTGGGGTCAAGGTATTTGAAGGGTGCGCAGGAGCTTCTAGATGAAGTTGTGAACGTCGGCGGGGGAATCTACAAAGATGGGAAATTTGCAGATGACAACAAAGATAAGATGAAAGCGAATAGAGAATCGTCATCTGGTGGTGGTGGTGGTGGGGGAGAACATAATAATAGTAACCATGTAGTTGTAGCTGAACTCACTACGGCGCAGAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTTACTATGCTCGATGAGGTAGAGCAGAGGTACAAGCAATATCACCATCAAATGCAAGTTGTGATATCATCATTTGAACAAGCAGCAGGTTTTGGTTCAGCAAAATCCTACACTGCCCTTGCCCTAAAGACAATCTCAAAGCAATTTCGGTGTCTTAAAGATGCAATCTCTGCACAAATCAAAGCGACGAGCAAGAGCTTGGGTGAAGATGATTGCTTAGGAGTTAAAGTCGAAGGGTCGAGGCTAAGGTATGTCGATCACCATCTCCGGCAACAACGGGCATTGCAGCAGCTGGGAATGATTCAGCCCAATGCTTGGAGGCCCCAAAGAGGCTTGCCTGAACGAGCTGTTTCTATCCTTCGTGCTTGGCTCTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCCGATAAAATTATGCTTGCTAAACAAACGGGACTTGCTAGGAGCCAGGTATCAAACTGGTTTATCAATGCCCGAGTTCGCCTGTGGAAACCAATGGTTGAGGAAATGTACATGGAAGAAATCAAGGAGCAAGAAAAGGCTAATGGTTCAAAAGAATCAAGTCAATCAACCAATAAGGAGCGAGGGTCATCACCACCAAACAATGTCACACCAGAATCAGGTGATGAAATCAAACTTGAGCACATAAAAAATCTCCAATCATCAAAACAAGAAAGCTTCAACACTTCTCCAACAACCGAGATCTCAACAAACTCTTCAGTAGGAGGAGGACCCTTTCAATCCCACTCTGGTTTCCAACTTGTAGGATCATCTGATCACATGATACAAAGGAGTTCTGAAATGCAGAACAACTCTCCAAGTAGCATTGGTAACAACATAAGGTTTGGCAATGAAAGGAACCACAAAGATTTAGGCTACCATGCTTTAATGACAGACCACGGTGGCGGTTTCGGATCGTTGTTCTCCTCCATGGAAGACATTGGAATGAGCAGGTTCAATGTCACTCATGAGCAATTGGCTTCGCGGTTCCATGGAAATAATAATAATGGTGTTTCTCTCACTTTGGGACTTCACCACAATGAGAACCTCCCTAATATCTCAGCAACTCATCAACATGGATTTCTCTCACAGAACATTCATTTGGGAATGGGACTTGAGATGGGAAGTACCAATAATGGGAATGAGGTTGTGACAGGCACAGATTATGACACCATTGATATTCAAAACAGAAAGAGGTTTTCTGCACAATCATTACCAGATTTCTGTGGTCTGAGTGGCTAG 1956 0.4739 MATHFHGSTSEIHESSSASAADGLHAQTLHLMNSTYTPHHNHHNMLLLNHPNNLSTFHHAPPLQPPSPNNHHPVIHDITTAFHAPNYNLWGPATEQPRSAAATTTQPISIGGGAFRQPSQQGLSLSLSSDQTAYRQFTGELDAVPAAGTGNSPVSVVLGSRYLKGAQELLDEVVNVGGGIYKDGKFADDNKDKMKANRESSSGGGGGGGEHNNSNHVVVAELTTAQRQELQMKKSKLVTMLDEVEQRYKQYHHQMQVVISSFEQAAGFGSAKSYTALALKTISKQFRCLKDAISAQIKATSKSLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKIMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYMEEIKEQEKANGSKESSQSTNKERGSSPPNNVTPESGDEIKLEHIKNLQSSKQESFNTSPTTEISTNSSVGGGPFQSHSGFQLVGSSDHMIQRSSEMQNNSPSSIGNNIRFGNERNHKDLGYHALMTDHGGGFGSLFSSMEDIGMSRFNVTHEQLASRFHGNNNNGVSLTLGLHHNENLPNISATHQHGFLSQNIHLGMGLEMGSTNNGNEVVTGTDYDTIDIQNRKRFSAQSLPDFCGLSG* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3536 651 MobiDBLite consensus disorder prediction 422 443 - -
Lja3g3536 651 SMART HOX_1 343 407 IPR001356 GO:0003677
Lja3g3536 651 Pfam Homeobox KN domain 360 399 IPR008422 GO:0003677|GO:0006355
Lja3g3536 651 MobiDBLite consensus disorder prediction 187 214 - -
Lja3g3536 651 MobiDBLite consensus disorder prediction 1 20 - -
Lja3g3536 651 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 15 610 - -
Lja3g3536 651 Coils Coil 227 247 - -
Lja3g3536 651 Gene3D - 346 426 - -
Lja3g3536 651 SMART prehox3 151 295 IPR006563 -
Lja3g3536 651 ProSiteProfiles 'Homeobox' domain profile. 340 403 IPR001356 GO:0003677
Lja3g3536 651 MobiDBLite consensus disorder prediction 414 446 - -
Lja3g3536 651 Pfam Associated with HOX 156 294 IPR006563 -
Lja3g3536 651 CDD homeodomain 343 404 IPR001356 GO:0003677
Lja3g3536 651 MobiDBLite consensus disorder prediction 458 488 - -
Lja3g3536 651 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 15 610 - -
Lja3g3536 651 SUPERFAMILY Homeodomain-like 344 410 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3536 Lja-Chr3 70132295 70137694 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3536 87 648 Homeobox Transcription Factor Family AT2G35940 44.265 2.92e-123 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja3g3536 POX 1.6e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3536 - - gmx:100779075 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3536 3 70132295 70137694 Lja3g1030 3 10658260 10664462 PCT