Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3535 ATGGCTGAAATTGAAGTTCCTCCCCATTTTCTCTGCCCCATTTCCCTGCAACTCATGAGGGACCCTGTCACGGTTTGCACAGGAATAACCTACGACAGAGAAGACATTGAGAAATGGCTATTTTCATGCAAGAACAAGACATGCCCTGTTACAAAACAATCTCTTTTAGACACTGATCTCACTCCAAACCACACTCTGCGACGTTTGATACAAGGTTGGTGCACCCTCAATGCCTCATTTGGAGTTGAGCGCATTCCAACTCCAAAGCCTCCCATTGACAGAACCCACATTGTCAAACTCATCTCTGAAGCAAAGAGGTTCCCAGAGAAGCAAATCAAATGCCTCAGAAGGCTTCGCTCCATTGCTTCTGATGGTGAAAGGAATAAGAAATGCTTGGAATCTGCAGGAGCAGTGGAGTTTTTGGCTTCAACCATGAAGAGCATCCAAATCCAGCAAGATTCCCCTGTTTCCCCTGTTTGGGGTGAAGCAGCTATTGAAGTTCTGTTTCATCTAAACCCTTCTGAATCCCATCTGAAGAATCTGATCCACAACGAGGGAATTCAATTTATTGAGTCTTTGTTTCATGTTTTGAGGCTTGGGAACTACCAATCTCGAGCTTATGCAACTATGCTGATGAAATCAGCATTTGAGGTAGCTGATCCAGTCCAATTGATCAGTGTAAAATCAGAGCTTTTTCAGGAAATACTGAGAGTGCTGCGTGATCAGATCTCAAATCAGGCTTCAAAGGCTGCATTGAAGCTCATTGTGGAGCTCTGTCCATGGGGAAGAAACAGGATCAAAGCAGTTGAAGGTGGAGCAGTTTCATCTCTCATTGAGATCCTTCTTGATGTCCCAGAAAGAAGAGCTTGTGAGCTTGTTCTGATAGCTTTGGATCAGCTTTGTGGTTGTGCAGAAGGGAGAGCAGAGTTATTGAAACATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTGAGGGTTTCTCATGCAGCAAGTGATAGAGGGGTTAGAATTTTGGCCTCAATTTGTAAGCACTCTGCAAATTCTAGAGTGCTTCATGAAATGTTGCAGGTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTTGATAGCAGTTTCAAGACAAAGGAGAGGGCCAAGGAGGTGCTCAAATTGCACTCTACTGTTTGGAGGAATTCCCCATGTGTTCCTGTGCCTTTGCTATCACTCTATCCATGA 1221 0.4464 MAEIEVPPHFLCPISLQLMRDPVTVCTGITYDREDIEKWLFSCKNKTCPVTKQSLLDTDLTPNHTLRRLIQGWCTLNASFGVERIPTPKPPIDRTHIVKLISEAKRFPEKQIKCLRRLRSIASDGERNKKCLESAGAVEFLASTMKSIQIQQDSPVSPVWGEAAIEVLFHLNPSESHLKNLIHNEGIQFIESLFHVLRLGNYQSRAYATMLMKSAFEVADPVQLISVKSELFQEILRVLRDQISNQASKAALKLIVELCPWGRNRIKAVEGGAVSSLIEILLDVPERRACELVLIALDQLCGCAEGRAELLKHGAGVAIVSKKILRVSHAASDRGVRILASICKHSANSRVLHEMLQVGAVSKLCLVLQVDSSFKTKERAKEVLKLHSTVWRNSPCVPVPLLSLYP* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3535 406 SUPERFAMILY ARM repeat 110 390 IPR016024 -
Lja3g3535 406 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Lja3g3535 406 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Lja3g3535 406 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Lja3g3535 406 PANTHER OS11G0573500 PROTEIN 5 406 - -
Lja3g3535 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Lja3g3535 406 SUPERFAMILY RING/U-box 4 77 - -
Lja3g3535 406 Gene3D - 94 394 IPR011989 -
Lja3g3535 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lja3g3535 406 PANTHER WDSAM1 PROTEIN 5 406 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3535 Lja-Chr3 70122107 70123515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3535 3 406 U-box Gene Family AT2G35930 54.657 5.33e-161 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3535 - - gmx:100778012 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3535 3 70122107 70123515 Lja3g1033 3 10685517 10686728 PCT