Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3531 ATGGATGTTGATTCCTCGATGGTGCCGGACGCCGATCACGATCCAGCTACAGAGAATCACGCCGCGGCTGAGGAAGACGGAGAGAAGCTTCCAGAGCCTCCGTCATCCGAGGGTGGATCTCCGGCGCAGCCACAGAGCTCGGTGGTTGGGCCGAGGCTGGCGCCAACTTATACTGTGGTGAATGCGGTTATGGATAAGAAGGAGGACGGGCCGGGGTCGAGGTGCGGCCACACGTTGACGGCTGTGGCGGCGGTCGGAGAGGAGGGGACGCCGGGGTATATTGGTCCGAGGCTGATTTTGTTCGGTGGTGCCACTGCGCTTGAAGGCAATTCTGCGGCTTCAGGGACTCCTTCTTCTGCTGGAAATGCTGGCATACGTTTGGCTGGTGCCACGGCTGATGTCCACTGTTATGATGTCTTGACTAATAAATGGTCTAGGTTAACTCCCTATGGAGAACCTCCAACACCAAGGGCTGCACATGTGGCAACTGCTGTTGGTACCATGGTTGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCATGTTCTTGATCTCACGCAACAATGGCCCCGCTGGCATAGAGTATCTGTTCAGGGCCCTGGACCAGGGCCACGCTATGGACATGTAATGGCTTTGGTGGGGCAGAGGTATCTTATGGCAATTGGAGGCAATGATGGAAAAAGACCTTTGGCTGATGTGTGGGCCTTGGACACAGCTGCCAAGCCTTATGAGTGGCGCAAGTTAGAGCCTGAAGGAGAGGGACCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCGGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTGGCTAGTGCATATGGACTTGCTAAGCATAGAGATGGTCGTTGGGAATGGGCTATTGCTCCAGGTGTCTCACCATCTCCAAGATATCAACATGCAGCGGTATTTGTGAATGCAAGACTCCATGTGTCTGGTGGGGCTCTTGGTGGAGGACGGATGGTCGAGGACTCATCAAGTGTTGCAGTATTGGACACTGCTGCTGGTGTTTGGTGTGATGCAAAATCTGTTGTAACCAGTCCAAGGACTGGTAGATACAGCGCTGATGCAGCTGGAGGAGACGCTGCAGTTGAGTTGACTCGGCGTTGTAGGCATGCTGCGGCTGCTGTTGGTGATCTAATTTTTATTTATGGTGGTTTACGTGGGGGAATCTTGCTTGATGACCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAAACAACATCTGCTGCTTCACATGCTGCTGCTGCAGCAGCTGCATCTAATGTACAAGCAGGACACTTGCCTGGACGAAATGGCTTTGTTAATGATAGAACGAGACAAGCGATGCCTGAAGCGGCTGCTGATGGTTCTGTTGTATTAGGCAATCCAGTTGCTCCCCCAATGAATGGTGACATTTATACGGATATCAGCACTGAAAATGCCATGCTTCAGGGACCTCGGCAAACTGCCAAAGGAGTTGAGTATCTGGTTGAAGCATCTGCAGCAGAAGCTGAAGCTATCAGTGCCGCACTGGCTGCTGCAAAGGCACGACAAGAGAATGGACTCAATGGAGAAGTTGAATTGCCTGACAGAGACCGTGGGGCGGAGGCTACCCCAAGTGGGAAACACACATCTTCCTTGATTAAGCCTGATTCTGTTGGGTCAAATAACATTGCTTCTGGTGGAGTTCGGCTGCATCACAGAGCTGTAGTTGTTGCTGCCGAGACTGGTGGAGCCTTAGGTGGTATGGTTAGACAACTTTCAATTGATCAATTTGAAAATGAAGGCAGGCGTGTCAGTTATGGGACTCCGGAAAATGCAACTGCTGCTAGAAAATTGTTAGATCGGCAGATGTCAATCAATAGTGTGCCCAAAAAGGTCATAGCACACCTCTTAAAGCCTCGTGGATGGAAACCACCAGTACGCCGACAGTTTTTCTTAGATTGTAATGAAATTGCTGATCTCTGTGATAGTGCTGAGCGGATATTTTCAACAGAACCAAGTGTCTTACAACTTAGTGCTCCGATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTCATGCGCCTTTTTGACGAGTATGGTGCACCGTCCACTGCCGGTGATATTGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATAGGGGACAGCACAGCCTGGAAACTATATCCCTTCTTCTTTCTCTGAAGGTTGAGTATCCCAACAATGTACATTTAATACGTGGAAATCATGAAGCTGCAGATATTAATGCTCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACATGGCATCGAATGAACCGGTTATTTAATTGGCTTCCTCTGGCGGCTTTAATTGAAAAAAAAATTATTTGCATGCATGGTGGGATCGGTCGTTCAATAAGTCATGTGGAGCAGATTGAGAATATTCAGCGTCCAATTCCGATGGAAGCAGGGTCAATTGTGCTCATGGATCTATTATGGTCTGATCCTACAGAGAATGACAGTGTGGAAGGACTGCGGCCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGTCCTGATCGGGTTGTGGAATTTTGCAACAACAATGATCTTCAGCTAATTGTTCGTGCACATGAATGTGTGATGGATGGATTTGAGCGTTTTGCCCAGGGACATCTTATCACGCTTTTCTCAGCTACAAATTATTGTGGTACCGCAAATAATGCTGGGGCAATATTAGTTTTGGGCAGAGACCTTGTTGTGGTTCCTAAGCTGATTCATCCATTACCACCTGCAATTTCTTCACCAGAAACGTCACCTGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCGGCGACACCAACTAGAGGCCGTCCCCAAGTAACAAATGACCGAGGCTCGCTCGCTTGGATGTAG 2976 0.4876 MDVDSSMVPDADHDPATENHAAAEEDGEKLPEPPSSEGGSPAQPQSSVVGPRLAPTYTVVNAVMDKKEDGPGSRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRLTPYGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDAKSVVTSPRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGILLDDLLVAEDLAAAETTSAASHAAAAAAASNVQAGHLPGRNGFVNDRTRQAMPEAAADGSVVLGNPVAPPMNGDIYTDISTENAMLQGPRQTAKGVEYLVEASAAEAEAISAALAAAKARQENGLNGEVELPDRDRGAEATPSGKHTSSLIKPDSVGSNNIASGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSTEPSVLQLSAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLSLKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRMNRLFNWLPLAALIEKKIICMHGGIGRSISHVEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVVEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPATPTRGRPQVTNDRGSLAWM* 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3531 991 Gene3D - 624 967 IPR029052 -
Lja3g3531 991 MobiDBLite consensus disorder prediction 968 991 - -
Lja3g3531 991 SUPERFAMILY Kelch motif 128 418 IPR015915 GO:0005515
Lja3g3531 991 Pfam Galactose oxidase, central domain 209 262 - -
Lja3g3531 991 MobiDBLite consensus disorder prediction 1 52 - -
Lja3g3531 991 MobiDBLite consensus disorder prediction 552 566 - -
Lja3g3531 991 CDD MPP_Bsu1_C 640 942 IPR041758 -
Lja3g3531 991 Gene3D - 181 437 IPR015915 GO:0005515
Lja3g3531 991 Pfam Kelch motif 315 360 IPR011498 GO:0005515
Lja3g3531 991 Pfam Calcineurin-like phosphoesterase 688 895 IPR004843 GO:0016787
Lja3g3531 991 ProSitePatterns Serine/threonine specific protein phosphatases signature. 757 762 IPR006186 GO:0016787
Lja3g3531 991 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 990 - -
Lja3g3531 991 PRINTS Serine/threonine phosphatase family signature 756 780 IPR006186 GO:0016787
Lja3g3531 991 PRINTS Serine/threonine phosphatase family signature 723 750 IPR006186 GO:0016787
Lja3g3531 991 PRINTS Serine/threonine phosphatase family signature 794 820 IPR006186 GO:0016787
Lja3g3531 991 PRINTS Serine/threonine phosphatase family signature 688 715 IPR006186 GO:0016787
Lja3g3531 991 PRINTS Serine/threonine phosphatase family signature 906 922 IPR006186 GO:0016787
Lja3g3531 991 PRINTS Serine/threonine phosphatase family signature 884 904 IPR006186 GO:0016787
Lja3g3531 991 SUPERFAMILY Metallo-dependent phosphatases 645 951 IPR029052 -
Lja3g3531 991 MobiDBLite consensus disorder prediction 537 551 - -
Lja3g3531 991 PIRSF STPPP_BSU1 27 991 IPR012391 GO:0004721|GO:0009742
Lja3g3531 991 Gene3D - 55 180 IPR015915 GO:0005515
Lja3g3531 991 MobiDBLite consensus disorder prediction 968 982 - -
Lja3g3531 991 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 990 - -
Lja3g3531 991 MobiDBLite consensus disorder prediction 1 32 - -
Lja3g3531 991 SMART pp2a_7 660 944 IPR006186 GO:0016787
Lja3g3531 991 MobiDBLite consensus disorder prediction 535 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3531 Lja-Chr3 70016120 70031848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3531 652 887 Calmodulin-binding Proteins AT5G63870 29.779 1.94e-27 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3531 3 70016120 70031848 Lja3g1037 3 10732237 10743486 PCT