Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3525 ATGTTTGGAAGGGCACCGAAGAAAAGTGATAGCACTAGGTACTATGAGATCCTCGGTGTTCCGAAGAATGCTTCTCAGGATGATTTGAAGAAGGCGTATAAGAAAGCTGCCATCAAGAATCACCCTGATAAGGGCGGTGATCCTGAAAAGTTTAAGGAGCTGGCGCAAGCTTATGAGGTTTTGAGTGACCCTGAGAAGCGTGAGATATATGATCAGTATGGTGAAGATGCGCTTAAGGAAGGAATGGGTGGTGGTGGCGGTGGCCATGACCCATTCGATATTTTCCAGTCATTCTTTGGTGGAGGCGGAGGCCCATTCTCCGGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGACGTGGTTCACCCTCTGAAGGTCTCTTTGGAGGACCTTTACAGTGGAACTGCTAAGAAGCTTTCACTCTCAAGGAATGTGTTGTGCTCCAAGTGCAATGGGAAAGGATCAAAGTCTGGGGCTTCCATGAAGTGTGCTGGTTGCCAGGGTACTGGTATGAAGGTGTCCATTAGGCACCTGGGTCCATCTATGATTCAGCAAATGCAACATCCTTGCAATGAATGTAAGGGAACTGGAGAGACAATCAATGACAGAGATCGATGCCCACAGTGCAAGGGAGAGAAGGTTGTCCAAGAGAAGAAAGTGCTTGAAGTTATTGTGGAGAAGGGAATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCGCCGGATACCGTCACTGGGGATATTGTCTTTGTCCTACAACAGAAGGAACATCCCAAGTTCAAAAGAAAGTCTGAAGATCTTTTTGTTGAGCACACTTTGTCCCTAACTGAGGCTCTATGTGGCTTCCAGTTTGTGCTTACTCACTTGGATGGAAGGCAACTCCTTATCAAATCAAACCCTGGGGAAGTTGTTAAGCCTGATTCATACAAGGCTATTAACGATGAGGGGATGCCGGTGTATCAGAGGCCTTTCATGAAGGGAAAGCTTTACATTCACTTCACTGTGGAGTTCCCTGAATCTCTGAGTGCTGAGCAGGTTAAGGCTCTAGAGGCTGTTCTGCCACCAAAGCCTTCATCACAGTTGACAGACATGGAGCTGGACGAGTGTGAAGAGACCACACTTCATGATGTCAACATAGAAGAAGAGACAAGGAGGAGACAGCAAGCTCAGCAGGAGGCGTATGATGAGGATGATGACATGCACGGTGGTGGTGCTCAAAGAGTACAGTGCGCCCAGCAGTGA 1260 0.481 MFGRAPKKSDSTRYYEILGVPKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGGGGPFSGGSSRGRRQRRGEDVVHPLKVSLEDLYSGTAKKLSLSRNVLCSKCNGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKSEDLFVEHTLSLTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPVYQRPFMKGKLYIHFTVEFPESLSAEQVKALEAVLPPKPSSQLTDMELDECEETTLHDVNIEEETRRRQQAQQEAYDEDDDMHGGGAQRVQCAQQ* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3525 419 CDD DnaJ_zf 149 215 IPR001305 GO:0031072|GO:0051082
Lja3g3525 419 Gene3D DnaJ domain 10 109 IPR036869 -
Lja3g3525 419 ProSiteProfiles Zinc finger CR-type profile. 136 220 IPR001305 GO:0031072|GO:0051082
Lja3g3525 419 CDD DnaJ 14 63 IPR001623 -
Lja3g3525 419 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Lja3g3525 419 Pfam DnaJ central domain 149 215 IPR001305 GO:0031072|GO:0051082
Lja3g3525 419 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Lja3g3525 419 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 419 IPR044713 GO:0006457|GO:0030544
Lja3g3525 419 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 146 218 IPR036410 -
Lja3g3525 419 Pfam DnaJ C terminal domain 123 344 IPR002939 -
Lja3g3525 419 PRINTS DnaJ domain signature 15 33 IPR001623 -
Lja3g3525 419 PRINTS DnaJ domain signature 46 66 IPR001623 -
Lja3g3525 419 PRINTS DnaJ domain signature 66 85 IPR001623 -
Lja3g3525 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 355 IPR008971 GO:0006457|GO:0051082
Lja3g3525 419 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 419 - -
Lja3g3525 419 Hamap Chaperone protein DnaJ [dnaJ]. 10 370 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja3g3525 419 SUPERFAMILY Chaperone J-domain 8 110 IPR036869 -
Lja3g3525 419 Gene3D - 110 261 - -
Lja3g3525 419 MobiDBLite consensus disorder prediction 379 419 - -
Lja3g3525 419 CDD DnaJ_C 120 347 - -
Lja3g3525 419 Gene3D - 149 215 - -
Lja3g3525 419 MobiDBLite consensus disorder prediction 379 409 - -
Lja3g3525 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 120 264 IPR008971 GO:0006457|GO:0051082
Lja3g3525 419 SMART dnaj_3 12 66 IPR001623 -
Lja3g3525 419 Pfam DnaJ domain 14 71 IPR001623 -
Lja3g3525 419 Gene3D - 263 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3525 Lja-Chr3 69944337 69946968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3525 14 73 C2H2 Transcription Factor Family AT1G74250 42.029 4.06e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3525 3 69944337 69946968 Lja3g3525 3 69944337 69946968 ECH
Lja3g1040 3 10798702 10801411 Lja3g3525 3 69944337 69946968 ECH
Lja3g3525 3 69944337 69946968 Lja3g1040 3 10798702 10801411 PCT