Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3520 ATGTCAATGGACATGATGGGAACCGAGCGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTCGCGGTTAGTGTTCCATGCAGCAGTATGCTCACAGTTGTGACAGTTAGATGTGGGCATTGTGCCAATTTGCTATCAGTCAACATGGGAGCTTCACTTCAAACATTACCTCCTCAAGACCCTCAGCACTTTCAAGAGCCAAGCAGGAAGGAGCTAGGATCATCTTCAAGATGCAAAGCATTTGAGCCTGTAAGCCATGAGCAACCTAGGAATATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCCGCTTATAATAGGTTCATTAAGGAGGAAATACAAAGAATCAAAGCCAGTAACCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTTCCTCACATTCACTTTGGGCTAAAGCTTGATGGCAGCAAGCAAGCAAAGCTGGACCAGCAGGGGGATGCTACTCAAAAGTCTAACGGATTATACTGA 528 0.4602 MSMDMMGTERVCYVHCNFCNTTLAVSVPCSSMLTVVTVRCGHCANLLSVNMGASLQTLPPQDPQHFQEPSRKELGSSSRCKAFEPVSHEQPRNIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDQQGDATQKSNGLY* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3520 175 MobiDBLite consensus disorder prediction 58 106 - -
Lja3g3520 175 Pfam YABBY protein 8 151 IPR006780 GO:0007275
Lja3g3520 175 SUPERFAMILY HMG-box 96 144 IPR036910 -
Lja3g3520 175 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 175 - -
Lja3g3520 175 PANTHER PROTEIN YABBY 6-RELATED 3 175 IPR006780 GO:0007275
Lja3g3520 175 Gene3D High mobility group box domain 89 165 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3520 Lja-Chr3 69878614 69888548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3520 1 175 C2C2-YABBY Transcription Factor Family AT1G08465 66.667 5.91e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lja3g3520 YABBY 2.2e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3520 K25796 - gmx:100785458 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3520 3 69878614 69888548 Lja3g1043 3 10819257 10824771 PCT