Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3516 ATGGAGGTTCCTGTGATGGAAGAGAATGAAACTACCAAGAGTGAGGCTCATTTGACTTCTGCTGCTGCGTTTGTGGAGGGTGGAATTCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTCTGTGACAGTGAGCCTTCTACGGTGACAGGTTGCAAGCACGAGTTTCATCTTCAGTGTATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTATCAGTCTCAAAGATCCTACAAGTCAGGAATTGCTTGAGGCTGTGGAAAGAGAGAGGAACGTTAGGTTCAATCCATCTAGAAATGCTGCAATATTTCATCATCCAACACTGGGAGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGAATAATCCAACACCTAGCTGCTGCTGCAGCAATGGGGCGAGCACGTCATATTGCTAGAAGGGAGGGCCAGAGGAACAGGTCATCAGCTCAAGGCCGTCCACAATTTTTGGTATTTTCAACTCACCCTAATTCACCTCCCGTAGCCCCTGCTTCTTCCTCTCTAAATCAGAGGGGGGATGGTGAACCAGCTCCAGCAGTTGCTGTTGCCACTCTGTCTCAAACTCCTGCAACTGGAGAAGAATCACCACAACTAACTTTAGTTCCTCCTGTTCAAGCTGACCAGGTTCCTGTTTTAGGATCTGGGTCTGCTGCTCTTGTTGCTGATAATCAGGGATCATCTTACATCAATAGAAGATCTCCCAATCAGTCGTCTCCAAACAGTCAAGACAGAGCAGGGCCATCAGAATTGCAGTCATTTTCAGAATCTCTGAAATCTAAATTAAATGCTGTGTCAACAAGATACAAAGATTCAATTTCCAAGAGCACCAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAACACCTCTATGTCAGATCTTGGATCTGAAGTCCGGCGAGAAGTTAATGCAGGGATTGCAACTGTTTCACGCATGATGGAACGCCTGGAGACCAGGGATAATAGAAGTAGTAGCAATTCTGCTCCAACTAATTTAGAGGATGGTTCAGTTCAGGGATCAAATGATCAGCATTTGACAGATACTGAAGTGGATGGTCTTGTGAGAGACAACAACACTAAAGCATCTTGTGCTGCAGGCTCTAGTTCAAATTAA 1179 0.458 MEVPVMEENETTKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSEPSTVTGCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNVRFNPSRNAAIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPQFLVFSTHPNSPPVAPASSSLNQRGDGEPAPAVAVATLSQTPATGEESPQLTLVPPVQADQVPVLGSGSAALVADNQGSSYINRRSPNQSSPNSQDRAGPSELQSFSESLKSKLNAVSTRYKDSISKSTRGWKERWFSRNTSMSDLGSEVRREVNAGIATVSRMMERLETRDNRSSSNSAPTNLEDGSVQGSNDQHLTDTEVDGLVRDNNTKASCAAGSSSN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3516 392 MobiDBLite consensus disorder prediction 344 369 - -
Lja3g3516 392 MobiDBLite consensus disorder prediction 250 279 - -
Lja3g3516 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 392 - -
Lja3g3516 392 Pfam Ring finger domain 36 77 IPR001841 -
Lja3g3516 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 392 - -
Lja3g3516 392 MobiDBLite consensus disorder prediction 336 392 - -
Lja3g3516 392 MobiDBLite consensus disorder prediction 173 195 - -
Lja3g3516 392 SMART ring_2 37 77 IPR001841 -
Lja3g3516 392 MobiDBLite consensus disorder prediction 173 200 - -
Lja3g3516 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 86 IPR013083 -
Lja3g3516 392 ProSiteProfiles Zinc finger RING-type profile. 37 77 IPR001841 -
Lja3g3516 392 SUPERFAMILY RING/U-box 30 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3516 Lja-Chr3 69804557 69809395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3516 34 85 C3H Transcription Factor Family AT4G00335 46.154 1.70e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3516 K19043 - gmx:100780275 650.203