Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3512 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCAGCTTCTTCCACCATAAGCCAATTGTTCTCAACTCTTTTCCTGAAGACCACAAAAACAACCACAACCACAACCACAACAACAACAAGAAACTTAGTCCCAATAACATGGACAACAAAGTTAACAACACCGCCAATAACAACAACAGCACCGCCACAATCCCATTCCAAGTCAACCTTAGCTCCTCTGATGAGAAGAGACCCATCATCGATGAAATGGACTTCTTCTCTGATAATAAGAACAACAACAACAACAAGGATCATCATGACACTCTTGTTGGCTCTGCCTCCACCTCTGCACCTCATGATCATTCCACCAATCCTGCTTTGTTAGAATTCAAAGTAAACACTGGTCTGAATCTTCTCACCACCAACACTAGCAGTGATCAGTCCATGGTTGAGGATGACATACCATCCAATTTGGAAGACAAAAGAGCTAAGATGGAGCTGGTTGTTCTTCAAGCTGAGATTGAGCGAGTGAAGGTGGAGAATCATCGCCTGCGGAGCATGCTTGAACAGGTGAACACCAATTACAATGAGCTGCGGGTGCATTTGGTGAGCTTGATGCAGGGCCAGAAGGCTGGGGAGGAAGGTGGTGGAGACCAACAAAAACAAGTGTTTGATGGAAAACTTGAAGGGGAGAGGAAACAATCTGGGAATGGTGGAGGAGCTCTGGTGCCGCGGCAGTTTATGGATCTCGGGTTGGCGACTAATGCTGATGTTGATGAACCTTCACTCTCTTCATCTGTGGGAAGAAGTCAGGAACAGTCAAAGTCACCTGCAAATAATGTGGAGGTGGGCTCTGATGAAGACAAGAAGGAATTTTCTAGTGCCATAATTGAAAGAGAGGATAGTCCCCCAAATCAAGGTTTAACTGCTAATAGCGTTCCAAGGTTCAGTCCTCCGGGAAATGTTGATCAAGCTGAAGCCACCATGAGAAAGGCAAGAGTTTCGGTTAGAGCTCGATCAGAGGCATCTATGCTCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAAATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTACAGATGCACCATGGCTGCTGGTTGCCCAGTCAGAAAACAGGTACAAAGGTGTGCTGAAGACAGAACAATACTGATCACAACATATGAAGGAAACCACAAACACCCTCTGCCTCCAGCAGCAATGGCAATGGCACAAACAACTTCCTCAGCTGCAAGAATGCTGCTTTCAGGATCAATGTCAAGTGCTGATGGCCTGATGAATGCAAACTTCCTCACAAGGACACTCCTTCCTTGCTCCTCAAGCATGGCAACAATTTCAGCATCAGCTCCATTCCCAACTGTCACATTGGACTTGACTCACTCTCCAAACCCATTACAGTTCCCAAAAAACCCAACCCAATTCCAAATCCCCTTCCCAGGTATCCCTCAGAATCTAGCAAATTCCCCAGCCTCATTACTGCCTCAGATATTTGGTTATAACCAGTCAAAGTTTTCAGGGCTTCAAATGTCTCAGAATGCTTCTTCAGACCCTTCTCAATCTCAACCACCACCACCACCTCACCTTGCTGACACAATCAGTGCTGCCTCTGCTGCCATTGCTGCTGATCCCAATTTCACTGCAGCTTTGGCAGCCGCCATCACTTCCATTATTGGAGGAGCAGCGCAGCCAAACACCAATAACAGTGCCAATAATAATGGCAACACCAATGTTACATCAAGCAACAGCAACAATAGCAATGGGAAGCAATAA 1791 0.4629 MARGGGLSIDSDPIGSSFFHHKPIVLNSFPEDHKNNHNHNHNNNKKLSPNNMDNKVNNTANNNNSTATIPFQVNLSSSDEKRPIIDEMDFFSDNKNNNNNKDHHDTLVGSASTSAPHDHSTNPALLEFKVNTGLNLLTTNTSSDQSMVEDDIPSNLEDKRAKMELVVLQAEIERVKVENHRLRSMLEQVNTNYNELRVHLVSLMQGQKAGEEGGGDQQKQVFDGKLEGERKQSGNGGGALVPRQFMDLGLATNADVDEPSLSSSVGRSQEQSKSPANNVEVGSDEDKKEFSSAIIEREDSPPNQGLTANSVPRFSPPGNVDQAEATMRKARVSVRARSEASMLTDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHKHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTHSPNPLQFPKNPTQFQIPFPGIPQNLANSPASLLPQIFGYNQSKFSGLQMSQNASSDPSQSQPPPPPHLADTISAASAAIAADPNFTAALAAAITSIIGGAAQPNTNNSANNNGNTNVTSSNSNNSNGKQ* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3512 596 MobiDBLite consensus disorder prediction 302 316 - -
Lja3g3512 596 Coils Coil 165 192 - -
Lja3g3512 596 MobiDBLite consensus disorder prediction 29 68 - -
Lja3g3512 596 MobiDBLite consensus disorder prediction 256 279 - -
Lja3g3512 596 Pfam WRKY DNA -binding domain 345 402 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3512 596 ProSiteProfiles WRKY domain profile. 338 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3512 596 MobiDBLite consensus disorder prediction 569 596 - -
Lja3g3512 596 MobiDBLite consensus disorder prediction 514 535 - -
Lja3g3512 596 SUPERFAMILY WRKY DNA-binding domain 336 404 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3512 596 Gene3D WRKY domain 328 405 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3512 596 MobiDBLite consensus disorder prediction 255 321 - -
Lja3g3512 596 MobiDBLite consensus disorder prediction 91 119 - -
Lja3g3512 596 MobiDBLite consensus disorder prediction 280 295 - -
Lja3g3512 596 MobiDBLite consensus disorder prediction 103 119 - -
Lja3g3512 596 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 66 593 IPR044810 GO:0003700
Lja3g3512 596 MobiDBLite consensus disorder prediction 42 68 - -
Lja3g3512 596 PANTHER OS05G0567200 PROTEIN 66 593 - -
Lja3g3512 596 SMART WRKY_cls 343 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3512 Lja-Chr3 69752971 69756205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3512 79 581 WRKY Transcription Factor Family AT1G62300 49.711 1.55e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g3512 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3512 - - gmx:100127384 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3512 3 69752971 69756205 Lja3g1059 3 10976846 10980364 PCT