LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3508	ATGCAAGCAATTGAGGTGAAGAATCATTCAACGCTGAATGGAAAAGTAATAAGGGTCTTGTGGTCGCGTCGTGATCCTGATATTAGGAAGAATTGCATTGGGAACGTTTTTGTTAAGAACTTGGCAGAATCAGTGGATAGTGCTGGACTGGAAGAAATCTTTAAGAAATATGGGAATATTTTAGTTGTCATGGCTGATGATGGGAAGAGCAAAGGATATGGGTTTGTTCAATTTGAATCAGAGGAGTCTGCAAATGCTGCCATTGAGAAGCTCAATGGCTCTACTATCAATGATAAGCATATGCATGTGAGAATATTCTGCATTGGTTCTTATGAGCGCATTTTGCCTGGCCCTGATGCCAGATATACTAATTTGTACATGAAGAGTTTAGACCTAGATATTACAGAAGCACTTCTGAAGGAAAAGTTTTCCTCTTTTGGGAAAATCGTTAGCTTGACTATTTCAAAGGATGAAAATGGGATGTCAAAGGGCTTTGGCTTTGTGAACTATGAAAACTCAGATGATGCTAAAAGGGCCTTGGAAGCGATGAACGGAACACAACTAGGTAGTTTTTTTTTTGCATCCTTTTACTGTGCTGTTATGAAGGACGAGAAAGGGATAAGCAAAGGGTTTGGTTTTGTCTGTTTCTCTACTCCTGAGGAGGCCAACAAAGCTCTCTTGAAGAATTGCTATAGTGCCATTCCTGATGATGGGAAGGTGATTGTTGTGGAGTCATTTCTTCCATTTGTACCTGAGAATAATCATGTTTGGAAGTCTGTATCTACATTAGATGTTCTGATGATGACTCAATTCTCCGAAGGGAAAGAGCGAACTGAGCAACAGTTCTTGGAATTGGCAACTGCTACTGGATTTAGTGGCGTTAGATATGAATGTCATGTTTATACCTACTGGGTTATGGAGTTCTTCAAGTAG	933	0.3987	MQAIEVKNHSTLNGKVIRVLWSRRDPDIRKNCIGNVFVKNLAESVDSAGLEEIFKKYGNILVVMADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKHMHVRIFCIGSYERILPGPDARYTNLYMKSLDLDITEALLKEKFSSFGKIVSLTISKDENGMSKGFGFVNYENSDDAKRALEAMNGTQLGSFFFASFYCAVMKDEKGISKGFGFVCFSTPEEANKALLKNCYSAIPDDGKVIVVESFLPFVPENNHVWKSVSTLDVLMMTQFSEGKERTEQQFLELATATGFSGVRYECHVYTYWVMEFFK*	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3508	310	SMART	rrm1_1	35	104	IPR000504	GO:0003723
	Lja3g3508	310	SMART	rrm1_1	124	196	IPR000504	GO:0003723
	Lja3g3508	310	Gene3D	-	111	191	IPR012677	-
	Lja3g3508	310	Gene3D	Vaccinia Virus protein VP39	214	299	IPR029063	-
	Lja3g3508	310	PANTHER	POLYADENYLATE-BINDING PROTEIN	199	226	-	-
	Lja3g3508	310	PANTHER	POLYADENYLATE-BINDING PROTEIN	2	191	-	-
	Lja3g3508	310	Gene3D	-	34	106	IPR012677	-
	Lja3g3508	310	SMART	rrm2_1	35	104	IPR003954	GO:0003676
	Lja3g3508	310	SUPERFAMILY	RNA-binding domain, RBD	116	189	IPR035979	GO:0003676
	Lja3g3508	310	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	198	226	IPR000504	GO:0003723
	Lja3g3508	310	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	125	190	IPR000504	GO:0003723
	Lja3g3508	310	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	36	101	IPR000504	GO:0003723
	Lja3g3508	310	SUPERFAMILY	RNA-binding domain, RBD	2	106	IPR035979	GO:0003676
	Lja3g3508	310	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	213	308	IPR029063	-
	Lja3g3508	310	Pfam	O-methyltransferase domain	214	292	IPR001077	GO:0008171
	Lja3g3508	310	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	34	104	IPR000504	GO:0003723
	Lja3g3508	310	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	123	190	IPR000504	GO:0003723
	Lja3g3508	310	PANTHER	RNA BINDING PROTEIN	199	226	-	-
	Lja3g3508	310	PANTHER	RNA BINDING PROTEIN	2	191	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3508	Lja-Chr3	69690446	69693295	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g3508	34	225	Eukaryotic Initiation Factors Gene Family	AT2G36660	29.339	1.27e-21	93.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3508	K13126		-	gmx:100804671	290.041