Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3505 ATGGCATGGACAAGAGGCGCCATCATAGGACGTGGCTCTTCAGCCACCGTCTACCTCGCCGCCTCTCACCACTCCTCCTCCATCTCCGCCGTGAAGTCAGCTCCGCTGTCACAACCACAGTCACAACAACTCCAGAGAGAACAGAAAATCCTCTCTTCTCTGTCCTCTCCCCACATAGTCACCTACAAAGGTTGCGACATCACAACGGAAAGAAACAAGGTTTACTACAATCTCTTCATGGAGTACATGCCCTTCGGCACCCTCTCTCAGGCGAATAGCCGCCTCGGTGAGGCGGCGATCGCGGAGTACACACGGCAGATTCTTCAGGGGCTGGAGTACTTGCATTCAAACGGGGTGGTGCATTGTGACATTAAAGGTAGCAATATTTTGGTCGGTGAAGATGGAGTTGTTAAAATTGGAGACTTTGGGTGTGCTAAATTCGCCGCAGAGTCTCCGGCGGCGCCGATTGCCGGCACACCGATGTTCATGGCGCCGGAGGCGGCGCGAGGGGAGGCACAGGGGTATGCTTGTGATGTTTGGGCACTTGGGTGCACGGTGGTTGAAATCGCAACCGGGTTCGCGCCGTGGACTAATGTGGAAGACCCTGTCAATGTTCTTTACCGTGTAGCTTACTCCGGCGAGTCGCCGGAGATTCCTGGGTTTCTGTCGGAGCAAGCAAAGGATTTCTTAGGGAAGTGTTTCATGAGGAATCCTAAGGAGAGGTGGAGTTGTGGTCAGCTTCTGAAGCATCCATTTCTTGCAGAATTCAATTCAGATGGTAAGCAAGTTCAGGAATCTGATTCTCCAACCAGCATTCTTGAGCAACGATTTTGGAATTCTGTGGAAGATTCAGATTCATCAGAAGGTTTCTTCTTAGGCAATTTGGGTCAGACAAGTAGTTTTGAGAATGAGAATTCGGCTGCTGATAGGATCAGATGTCTTGCTGTGTGTTCTGGGAATCCAAGATGGGCATGGAATGGTGATGATGAGAATTGGATCACAACTAGAGGGAATGAAACAGGTGTTTCAACTAGGGATGAAGTTGATTTGGATGTTGAATTGGAGAAATGCATTGTTAGTGGTAGAATTAGTGGTTATTTTTGTGAGGATTATAAGTGTAGGGATGTTGTTAGTATTGTAGATGATAATTGTTTCAATTTTGAGAAGGGCATTGCTGAGATGCTGCTTCCTTCAACATTGGATTTTTTATGA 1212 0.481 MAWTRGAIIGRGSSATVYLAASHHSSSISAVKSAPLSQPQSQQLQREQKILSSLSSPHIVTYKGCDITTERNKVYYNLFMEYMPFGTLSQANSRLGEAAIAEYTRQILQGLEYLHSNGVVHCDIKGSNILVGEDGVVKIGDFGCAKFAAESPAAPIAGTPMFMAPEAARGEAQGYACDVWALGCTVVEIATGFAPWTNVEDPVNVLYRVAYSGESPEIPGFLSEQAKDFLGKCFMRNPKERWSCGQLLKHPFLAEFNSDGKQVQESDSPTSILEQRFWNSVEDSDSSEGFFLGNLGQTSSFENENSAADRIRCLAVCSGNPRWAWNGDDENWITTRGNETGVSTRDEVDLDVELEKCIVSGRISGYFCEDYKCRDVVSIVDDNCFNFEKGIAEMLLPSTLDFL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3505 403 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3505 403 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3505 403 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lja3g3505 403 CDD STKc_MAPKKK 3 253 - -
Lja3g3505 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Lja3g3505 403 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3505 403 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 357 - -
Lja3g3505 403 SUPERFAMILY Protein kinase-like (PK-like) 3 259 IPR011009 -
Lja3g3505 403 PANTHER MAP KINASE KINASE KINASE 1 357 - -
Lja3g3505 403 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3505 Lja-Chr3 69661923 69663162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3505 1 338 MAP Kinase Kinase Kinase AT1G05100 49.003 2.44e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja3g3505 Pkinase 1.2e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3505 K20716 - gmx:100786897 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3505 3 69661923 69663162 Lja3g1060 3 11006484 11009183 PCT